Sequence Similarity Clusters for the Entities in PDB 2XWB

Entity #1 | Chains: A,C
COMPLEMENT C3B BETA CHAIN protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 18 1250
95 % 8 25 1228 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 8 25 1256
70 % 8 25 1288
50 % 8 25 1345
40 % 11 28 1235
30 % 11 28 1208
Entity #2 | Chains: B,D
COMPLEMENT C3B ALPHA' CHAIN protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3878
95 % 6 18 1866 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 6 18 1908
70 % 6 18 1942
50 % 6 18 1962
40 % 6 18 1967
30 % 6 18 1896
Entity #3 | Chains: F,H
COMPLEMENT FACTOR B protein, length: 732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7052
95 % 4 5 6708 Flexibility: High
Max RMSD: 20.5, Avg RMSD: 11.5
PDBFlex
90 % 4 5 6689
70 % 4 5 6519
50 % 4 5 6077
40 % 4 5 5689
30 % 4 5 5114
Entity #4 | Chains: I,J
COMPLEMENT FACTOR D protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28086
95 % 24 26 1079 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.1
PDBFlex
90 % 24 26 1103
70 % 24 26 1140
50 % 25 27 1102
40 % 1682 1721 4
30 % 1822 1871 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures