Sequence Similarity Clusters for the Entities in PDB 2XWB

Entity #1 | Chains: A,C
COMPLEMENT C3B BETA CHAIN protein, length: 642 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 18 1218
95 % 8 24 1215 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 8 24 1242
70 % 8 24 1276
50 % 8 24 1328
40 % 11 27 1231
30 % 11 27 1207
Entity #2 | Chains: B,D
COMPLEMENT C3B ALPHA' CHAIN protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3770
95 % 6 17 1935 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 6 17 1982
70 % 6 17 2005
50 % 6 17 2009
40 % 6 17 1999
30 % 6 17 1928
Entity #3 | Chains: F,H
COMPLEMENT FACTOR B protein, length: 732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6887
95 % 4 5 6571 Flexibility: High
Max RMSD: 20.5, Avg RMSD: 11.5
PDBFlex
90 % 4 5 6548
70 % 4 5 6391
50 % 4 5 5955
40 % 4 5 5576
30 % 4 5 5015
Entity #4 | Chains: I,J
COMPLEMENT FACTOR D protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27446
95 % 24 26 1055 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.1
PDBFlex
90 % 24 26 1075
70 % 24 26 1114
50 % 25 27 1081
40 % 1657 1695 4
30 % 1797 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.