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An Information Portal to 105025 Biological Macromolecular Structures

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Sequence Clustering and Redundancy Reduction Results
2XUY
Sequence Clusters for the Sequence Entities in PDB 2XUY
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 258 265 27
95% 260 267 47
90% 260 267 49
70% 260 267 59
50% 367 384 34
40% 367 384 46
30% 370 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 268 25
95% 260 268 43
90% 260 268 45
70% 260 268 55
50% 360 378 41
40% 432 454 34
30% 432 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 237 35
95% 261 275 35
90% 261 275 37
70% 363 390 24
50% 363 390 33
40% 363 390 45
30% 363 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 269 22
95% 260 269 41
90% 260 269 43
70% 260 269 53
50% 360 380 38
40% 360 380 51
30% 428 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 267 26
95% 260 267 48
90% 260 267 50
70% 260 267 60
50% 260 267 93
40% 260 267 119
30% 260 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 271 20
95% 265 276 32
90% 265 276 34
70% 265 276 47
50% 368 391 32
40% 368 391 43
30% 368 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 263 28
95% 260 268 45
90% 260 268 47
70% 260 268 57
50% 260 268 91
40% 260 268 117
30% 360 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 170 54
95% 255 262 49
90% 259 266 51
70% 259 266 61
50% 259 266 94
40% 259 266 120
30% 259 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 183 48
95% 226 232 61
90% 226 232 64
70% 226 232 78
50% 226 232 115
40% 226 232 139
30% 226 232 160
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 234 37
95% 226 234 59
90% 226 234 63
70% 226 234 77
50% 362 381 37
40% 362 381 49
30% 362 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 260 268 23
95% 260 269 38
90% 260 269 41
70% 260 269 51
50% 260 269 90
40% 360 378 53
30% 360 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 206 42
95% 260 267 46
90% 260 267 48
70% 260 267 58
50% 260 267 92
40% 260 267 118
30% 260 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 242 249 34
95% 242 249 53
90% 242 249 55
70% 242 249 67
50% 242 249 104
40% 242 249 132
30% 242 249 151
Entity #22: Chains: V - TRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - ELONGATION FACTOR G protein, length: 691 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 21 1484
95% 32 36 1056
90% 32 37 1043
70% 32 37 1070
50% 48 54 693
40% 48 54 724
30% 50 56 696
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 230 38
95% 224 230 63
90% 224 230 66
70% 224 230 80
50% 282 293 73
40% 282 293 99
30% 282 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 258 261 29
95% 261 269 39
90% 261 269 42
70% 261 269 52
50% 361 378 39
40% 361 379 52
30% 361 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 261 268 24
95% 261 268 42
90% 261 268 44
70% 261 268 54
50% 362 382 36
40% 362 382 48
30% 362 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 263 273 18
95% 269 279 29
90% 269 279 30
70% 269 279 44
50% 269 279 84
40% 269 279 106
30% 313 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 262 272 19
95% 262 273 36
90% 262 273 38
70% 262 273 49
50% 308 323 56
40% 308 324 73
30% 308 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 258 268 21
95% 258 268 40
90% 262 272 39
70% 262 272 50
50% 364 384 35
40% 365 386 47
30% 434 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 155 76
95% 260 268 44
90% 260 268 46
70% 260 268 56
50% 360 378 40
40% 360 378 54
30% 428 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.