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tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Sequence Clustering and Redundancy Reduction Results
2XUY
Sequence Clusters for the Sequence Entities in PDB 2XUY
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 245 252 29
95% 247 254 48
90% 247 254 51
70% 247 254 63
50% 352 369 34
40% 352 369 48
30% 355 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 255 27
95% 247 255 44
90% 247 255 47
70% 247 255 59
50% 345 363 42
40% 381 403 39
30% 381 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 210 224 37
95% 248 262 36
90% 248 262 38
70% 348 375 24
50% 348 375 33
40% 348 375 47
30% 348 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 256 24
95% 247 256 42
90% 247 256 45
70% 247 256 57
50% 345 365 39
40% 345 365 53
30% 377 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 254 28
95% 247 254 49
90% 247 254 52
70% 247 254 64
50% 247 254 99
40% 247 254 124
30% 247 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 258 21
95% 252 263 35
90% 252 263 37
70% 252 263 48
50% 353 376 32
40% 353 376 45
30% 353 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 250 31
95% 247 255 46
90% 247 255 49
70% 247 255 61
50% 247 255 97
40% 247 255 122
30% 345 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 157 62
95% 242 249 51
90% 246 253 53
70% 246 253 65
50% 246 253 100
40% 246 253 126
30% 246 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 172 49
95% 215 221 64
90% 215 221 68
70% 215 221 81
50% 215 221 116
40% 215 221 144
30% 215 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 223 38
95% 215 223 63
90% 215 223 67
70% 215 223 80
50% 347 366 38
40% 347 366 52
30% 347 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 247 255 25
95% 247 256 39
90% 247 256 43
70% 247 256 55
50% 247 256 96
40% 345 363 55
30% 345 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 193 43
95% 247 254 47
90% 247 254 50
70% 247 254 62
50% 247 254 98
40% 247 254 123
30% 247 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 238 34
95% 231 238 55
90% 231 238 59
70% 231 238 71
50% 231 238 110
40% 231 238 133
30% 231 238 153
Entity #22: Chains: V - TRNA rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - ELONGATION FACTOR G protein, length: 691 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 21 1388
95% 30 34 1044
90% 30 35 1017
70% 30 35 1049
50% 46 52 674
40% 46 52 698
30% 48 54 671
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 219 39
95% 213 219 66
90% 213 219 70
70% 213 219 83
50% 271 282 81
40% 271 282 101
30% 271 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 245 248 32
95% 248 256 40
90% 248 256 44
70% 248 256 56
50% 346 363 40
40% 346 364 54
30% 346 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 248 255 26
95% 248 255 43
90% 248 255 46
70% 248 255 58
50% 347 367 37
40% 347 367 51
30% 347 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 250 260 18
95% 256 266 34
90% 256 266 36
70% 256 266 47
50% 256 266 88
40% 256 266 112
30% 298 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 249 259 20
95% 249 260 37
90% 249 260 39
70% 249 260 51
50% 293 308 57
40% 293 309 74
30% 293 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 245 255 23
95% 245 255 41
90% 249 259 40
70% 249 259 52
50% 349 369 36
40% 350 371 49
30% 383 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 142 82
95% 247 255 45
90% 247 255 48
70% 247 255 60
50% 345 363 41
40% 345 363 56
30% 377 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.