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THE STRUCTURE OF EF-TU AND AMINOACYL-TRNA BOUND TO THE 70S RIBOSOME WITH A GTP ANALOG
Sequence Clustering and Redundancy Reduction Results
2XQD
Sequence Clusters for the Sequence Entities in PDB 2XQD
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 265 27
95% 119 267 47
90% 119 267 49
70% 119 267 59
50% 162 382 34
40% 162 382 45
30% 162 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 268 25
95% 119 268 43
90% 119 268 45
70% 119 268 55
50% 156 376 41
40% 192 450 35
30% 192 450 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 237 35
95% 119 275 35
90% 119 275 37
70% 156 388 24
50% 156 388 33
40% 156 388 44
30% 156 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 269 22
95% 119 269 41
90% 119 269 43
70% 119 269 53
50% 156 378 38
40% 156 378 51
30% 190 448 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 267 26
95% 119 267 48
90% 119 267 50
70% 119 267 60
50% 119 267 93
40% 119 267 119
30% 119 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 271 20
95% 123 276 32
90% 123 276 34
70% 123 276 47
50% 163 389 32
40% 163 389 43
30% 163 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 263 28
95% 119 268 45
90% 119 268 47
70% 119 268 57
50% 119 268 91
40% 119 268 117
30% 156 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 170 53
95% 118 262 49
90% 119 266 51
70% 119 266 61
50% 119 266 94
40% 119 266 120
30% 119 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 183 47
95% 113 232 61
90% 113 232 64
70% 113 232 78
50% 113 232 115
40% 113 232 139
30% 113 232 160
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 234 37
95% 113 234 59
90% 113 234 63
70% 113 234 77
50% 157 379 37
40% 157 379 49
30% 157 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 268 23
95% 119 269 38
90% 119 269 41
70% 119 269 51
50% 119 269 90
40% 156 376 53
30% 156 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 206 42
95% 119 267 46
90% 119 267 48
70% 119 267 58
50% 119 267 92
40% 119 267 118
30% 119 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 249 33
95% 119 249 52
90% 119 249 55
70% 119 249 67
50% 119 249 104
40% 119 249 130
30% 119 249 150
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA G24A TRP-TRNA TRP rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU protein, length: 405 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10774
95% 17 30 968
90% 17 31 959
70% 30 56 411
50% 32 58 418
40% 32 58 447
30% 46 79 335
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 230 38
95% 112 230 62
90% 112 230 65
70% 112 230 79
50% 127 293 73
40% 127 293 98
30% 127 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 261 29
95% 119 269 39
90% 119 269 42
70% 119 269 52
50% 156 376 39
40% 156 377 52
30% 156 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 268 24
95% 119 268 42
90% 119 268 44
70% 119 268 54
50% 157 380 36
40% 157 380 48
30% 157 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 273 18
95% 127 279 29
90% 127 279 30
70% 127 279 44
50% 127 279 83
40% 127 279 106
30% 151 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 272 19
95% 120 273 36
90% 120 273 38
70% 120 273 49
50% 144 321 56
40% 144 322 74
30% 144 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 268 21
95% 119 268 40
90% 120 272 39
70% 120 272 50
50% 159 382 35
40% 160 384 46
30% 195 455 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 113 139
95% 119 268 44
90% 119 268 46
70% 119 268 56
50% 156 376 40
40% 156 376 54
30% 190 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.