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structure of cytotoxic domain of colicin e3 bound to the 70s ribosome (part 3 of 4)
Sequence Clustering and Redundancy Reduction Results
2XG1
Sequence Clusters for the Sequence Entities in PDB 2XG1
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 252 29
95% 129 254 48
90% 129 254 51
70% 129 254 63
50% 174 369 34
40% 174 369 47
30% 174 374 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 255 27
95% 129 255 44
90% 129 255 47
70% 129 255 59
50% 168 363 42
40% 172 403 39
30% 172 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 224 37
95% 129 262 36
90% 129 262 38
70% 168 375 24
50% 168 375 33
40% 168 375 46
30% 168 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 256 24
95% 129 256 42
90% 129 256 45
70% 129 256 57
50% 168 365 39
40% 168 365 53
30% 170 401 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 254 28
95% 129 254 49
90% 129 254 52
70% 129 254 64
50% 129 254 97
40% 129 254 122
30% 129 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 258 21
95% 133 263 35
90% 133 263 37
70% 133 263 48
50% 175 376 32
40% 175 376 44
30% 175 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 250 30
95% 129 255 46
90% 129 255 49
70% 129 255 61
50% 129 255 95
40% 129 255 120
30% 168 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 157 62
95% 128 249 51
90% 129 253 53
70% 129 253 65
50% 129 253 98
40% 129 253 124
30% 129 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 172 49
95% 123 221 64
90% 123 221 68
70% 123 221 81
50% 123 221 116
40% 123 221 144
30% 123 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 223 38
95% 123 223 63
90% 123 223 67
70% 123 223 80
50% 169 366 38
40% 169 366 52
30% 169 366 74
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 255 25
95% 129 256 39
90% 129 256 43
70% 129 256 55
50% 129 256 94
40% 168 363 55
30% 168 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 193 43
95% 129 254 47
90% 129 254 50
70% 129 254 62
50% 129 254 96
40% 129 254 121
30% 129 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 238 34
95% 129 238 55
90% 129 238 59
70% 129 238 71
50% 129 238 110
40% 129 238 133
30% 129 238 153
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - COLICIN-E3 protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 35203
95% 2 3 18209
90% 2 3 17682
70% 2 3 16271
50% 2 3 14282
40% 2 3 12806
30% 2 3 11049
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 219 39
95% 122 219 66
90% 122 219 70
70% 122 219 83
50% 137 282 81
40% 137 282 101
30% 137 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 248 32
95% 129 256 40
90% 129 256 44
70% 129 256 56
50% 168 363 40
40% 168 364 54
30% 168 364 75
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 255 26
95% 129 255 43
90% 129 255 46
70% 129 255 58
50% 169 367 37
40% 169 367 51
30% 169 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 260 18
95% 137 266 34
90% 137 266 36
70% 137 266 47
50% 137 266 88
40% 137 266 110
30% 163 313 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 259 20
95% 130 260 37
90% 130 260 39
70% 130 260 50
50% 156 308 57
40% 156 309 73
30% 156 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 255 23
95% 129 255 41
90% 130 259 40
70% 130 259 52
50% 171 369 36
40% 172 371 48
30% 175 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 113 133
95% 129 255 45
90% 129 255 48
70% 129 255 60
50% 168 363 41
40% 168 363 56
30% 170 399 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.