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THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 3 OF 4).
Sequence Clustering and Redundancy Reduction Results
2WRQ
Sequence Clusters for the Sequence Entities in PDB 2WRQ
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 265 27
95% 234 267 47
90% 234 267 49
70% 234 267 59
50% 302 382 34
40% 302 382 45
30% 302 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 268 25
95% 234 268 43
90% 234 268 45
70% 234 268 55
50% 296 376 41
40% 326 436 38
30% 326 436 51
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 237 35
95% 234 275 35
90% 234 275 37
70% 296 388 24
50% 296 388 33
40% 296 388 44
30% 296 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 269 22
95% 234 269 41
90% 234 269 43
70% 234 269 53
50% 296 378 38
40% 296 378 51
30% 324 434 54
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 267 26
95% 234 267 48
90% 234 267 50
70% 234 267 60
50% 234 267 93
40% 234 267 119
30% 234 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 271 20
95% 239 276 32
90% 239 276 34
70% 239 276 47
50% 304 389 32
40% 304 389 43
30% 304 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 263 28
95% 234 268 45
90% 234 268 47
70% 234 268 57
50% 234 268 91
40% 234 268 117
30% 296 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 170 53
95% 231 262 49
90% 233 266 51
70% 233 266 61
50% 233 266 94
40% 233 266 120
30% 233 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 183 47
95% 213 232 61
90% 213 232 64
70% 213 232 78
50% 213 232 113
40% 213 232 138
30% 213 232 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 234 37
95% 213 234 59
90% 213 234 63
70% 213 234 77
50% 298 379 37
40% 298 379 49
30% 298 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 268 23
95% 234 269 38
90% 234 269 41
70% 234 269 51
50% 234 269 90
40% 296 376 53
30% 296 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 206 42
95% 234 267 46
90% 234 267 48
70% 234 267 58
50% 234 267 92
40% 234 267 118
30% 234 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 249 33
95% 229 249 52
90% 229 249 55
70% 229 249 66
50% 229 249 103
40% 229 249 130
30% 229 249 150
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - A-SITE TRNA THR rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Z - ELONGATION FACTOR TU-A protein, length: 406 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 8 5801
95% 28 30 916
90% 28 31 905
70% 43 56 410
50% 45 58 416
40% 45 58 443
30% 62 79 334
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 230 38
95% 211 230 62
90% 211 230 65
70% 211 230 79
50% 249 293 73
40% 249 293 98
30% 249 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 261 29
95% 235 269 39
90% 235 269 42
70% 235 269 52
50% 297 376 39
40% 297 377 52
30% 297 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 268 24
95% 235 268 42
90% 235 268 44
70% 235 268 54
50% 298 380 36
40% 298 380 48
30% 298 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 273 18
95% 243 279 29
90% 243 279 30
70% 243 279 44
50% 243 279 82
40% 243 279 106
30% 269 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 272 19
95% 236 273 36
90% 236 273 38
70% 236 273 49
50% 263 321 56
40% 263 322 73
30% 263 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 268 21
95% 234 268 40
90% 236 272 39
70% 236 272 50
50% 300 382 35
40% 301 384 46
30% 330 441 47
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 155 76
95% 234 268 44
90% 234 268 46
70% 234 268 56
50% 296 376 40
40% 296 376 54
30% 324 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.