Sequence Similarity Clusters for the Entities in PDB 2WQA

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 172 46
95 % 284 291 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 284 291 11
70 % 290 297 14
50 % 294 301 20
40 % 294 301 30
30 % 306 313 39
Entity #2 | Chains: E,F
RETINOL-BINDING PROTEIN 4 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6479
95 % 8 10 5100 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 23 2228
70 % 21 24 2119
50 % 21 24 2108
40 % 21 24 2100
30 % 21 24 2021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.