Sequence Similarity Clusters for the Entities in PDB 2WQA

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 169 172 47
95 % 285 292 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 285 292 12
70 % 291 298 16
50 % 295 302 22
40 % 295 302 34
30 % 307 314 46
Entity #2 | Chains: E,F
RETINOL-BINDING PROTEIN 4 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6692
95 % 8 10 5283 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 23 2303
70 % 21 24 2207
50 % 21 24 2196
40 % 21 24 2183
30 % 21 24 2089

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures