Sequence Similarity Clusters for the Entities in PDB 2WQA

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 175 48
95 % 288 295 10 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 288 295 12
70 % 294 301 15
50 % 298 305 22
40 % 298 305 35
30 % 310 317 47
Entity #2 | Chains: E,F
RETINOL-BINDING PROTEIN 4 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 16 2994
95 % 16 18 3067 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 28 31 1654
70 % 29 32 1610
50 % 29 32 1663
40 % 29 32 1676
30 % 29 32 1643

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures