Sequence Similarity Clusters for the Entities in PDB 2WQA

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 163 49
95 % 275 282 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 275 282 12
70 % 281 288 15
50 % 285 292 20
40 % 285 292 29
30 % 297 304 40
Entity #2 | Chains: E,F
RETINOL-BINDING PROTEIN 4 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 6385
95 % 8 10 4997 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 23 2201
70 % 21 24 2098
50 % 21 24 2088
40 % 21 24 2076
30 % 21 24 2000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.