Sequence Similarity Clusters for the Entities in PDB 2WPV

Entity #1 | Chains: A,C,E,G
UPF0363 PROTEIN YOR164C protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10489
95 % 1 5 3581 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 1 5 3632
70 % 1 5 3586
50 % 1 5 3490
40 % 1 5 3372
30 % 1 5 3161
Entity #2 | Chains: B,D,F,H
UBIQUITIN-LIKE PROTEIN MDY2 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 3039
95 % 1 5 3750 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 5 3801
70 % 1 5 3745
50 % 1 5 3633
40 % 1 5 3498
30 % 1 5 3267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures