Sequence Similarity Clusters for the Entities in PDB 2WPV

Entity #1 | Chains: A,C,E,G
UPF0363 PROTEIN YOR164C protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10668
95 % 1 5 3618 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 1 5 3679
70 % 1 5 3631
50 % 1 5 3538
40 % 1 5 3415
30 % 1 5 3202
Entity #2 | Chains: B,D,F,H
UBIQUITIN-LIKE PROTEIN MDY2 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 3073
95 % 1 5 3789 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 5 3850
70 % 1 5 3793
50 % 1 5 3678
40 % 1 5 3540
30 % 1 5 3307

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures