Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 15 1215
95 % 16 21 1215
90 % 16 21 1228
70 % 16 21 1258
50 % 16 21 1311
40 % 19 24 1208
30 % 19 24 1180
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 4954
95 % 10 14 1979
90 % 10 14 2025
70 % 10 14 2043
50 % 10 14 2061
40 % 10 14 2075
30 % 10 14 1975
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14545
95 % 4 4 8668
90 % 4 4 8581
70 % 4 4 8183
50 % 4 4 7466
40 % 4 4 6885
30 % 8 8 4187
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 4920
95 % 4 6 5562
90 % 4 6 5556
70 % 4 6 5437
50 % 4 6 5128
40 % 6 8 2969
30 % 9 11 2160

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.