Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 1488
95 % 18 25 1302 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 18 25 1324
70 % 18 25 1347
50 % 21 28 1288
40 % 21 28 1266
30 % 21 28 1262
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 1886
95 % 12 18 1974 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 6.0
PDBFlex
90 % 12 18 2016
70 % 12 18 2026
50 % 12 18 2052
40 % 12 18 2028
30 % 12 18 1926
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19083
95 % 4 5 8278 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 5 8210
70 % 4 5 7912
50 % 4 5 7264
40 % 4 5 6705
30 % 8 9 4261
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5091
95 % 4 7 5382 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 7 5420
70 % 4 7 5301
50 % 4 7 5040
40 % 8 11 2390
30 % 11 14 1886

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures