Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 15 1260
95 % 16 21 1261
90 % 16 21 1279
70 % 16 21 1307
50 % 16 21 1355
40 % 19 24 1242
30 % 19 24 1221
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5126
95 % 10 14 2043
90 % 10 14 2097
70 % 10 14 2110
50 % 10 14 2124
40 % 10 14 2123
30 % 10 14 2028
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15035
95 % 4 4 8978
90 % 4 4 8884
70 % 4 4 8461
50 % 4 4 7709
40 % 4 4 7103
30 % 8 8 4307
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5089
95 % 4 6 5722
90 % 4 6 5714
70 % 4 6 5594
50 % 4 6 5263
40 % 6 8 3053
30 % 9 11 2222

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.