Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 15 1239
95 % 16 21 1239
90 % 16 21 1253
70 % 16 21 1280
50 % 16 21 1336
40 % 19 24 1230
30 % 19 24 1207
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5061
95 % 10 14 2023
90 % 10 14 2073
70 % 10 14 2083
50 % 10 14 2101
40 % 10 14 2108
30 % 10 14 2009
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 14887
95 % 4 4 8881
90 % 4 4 8794
70 % 4 4 8376
50 % 4 4 7639
40 % 4 4 7035
30 % 8 8 4270
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5026
95 % 4 6 5672
90 % 4 6 5666
70 % 4 6 5549
50 % 4 6 5221
40 % 6 8 3029
30 % 9 11 2202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.