Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 1239
95 % 18 24 1236 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 18 24 1261
70 % 18 24 1292
50 % 18 24 1349
40 % 21 27 1249
30 % 21 27 1224
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3564
95 % 12 17 1962 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 12 17 2010
70 % 12 17 2037
50 % 12 17 2048
40 % 12 17 2038
30 % 12 17 1962
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17349
95 % 4 5 7619 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 5 7567
70 % 4 5 7360
50 % 4 5 6785
40 % 4 5 6321
30 % 8 9 4148
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4497
95 % 4 7 5300 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 4 7 5321
70 % 4 7 5235
50 % 4 7 5005
40 % 6 9 3108
30 % 9 12 2318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures