Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 1199
95 % 18 24 1205 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 18 24 1232
70 % 18 24 1266
50 % 18 24 1318
40 % 21 27 1224
30 % 21 27 1200
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3465
95 % 12 17 1923 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.0
PDBFlex
90 % 12 17 1968
70 % 12 17 1991
50 % 12 17 1994
40 % 12 17 1986
30 % 12 17 1919
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16927
95 % 4 5 7443 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 5 7398
70 % 4 5 7214
50 % 4 5 6642
40 % 4 5 6188
30 % 8 9 4067
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 4370
95 % 4 7 5169 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 4 7 5187
70 % 4 7 5116
50 % 4 7 4891
40 % 6 9 3049
30 % 9 12 2267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.