Sequence Similarity Clusters for the Entities in PDB 2WIN

Entity #1 | Chains: A,C,E,G
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 15 1271
95 % 16 21 1267
90 % 16 21 1286
70 % 16 21 1317
50 % 16 21 1369
40 % 19 24 1248
30 % 19 24 1227
Entity #2 | Chains: B,D,F,H
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5177
95 % 10 14 2056
90 % 10 14 2111
70 % 10 14 2126
50 % 10 14 2141
40 % 10 14 2140
30 % 10 14 2043
Entity #3 | Chains: I,J,K,L
COMPLEMENT FACTOR B protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 15172
95 % 4 4 9045
90 % 4 4 8947
70 % 4 4 8523
50 % 4 4 7767
40 % 4 4 7149
30 % 8 8 4332
Entity #4 | Chains: M,N,P,Q
STAPHYLOCOCCAL COMPLEMENT INHIBITOR protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5141
95 % 4 6 5772
90 % 4 6 5764
70 % 4 6 5638
50 % 4 6 5298
40 % 6 8 3079
30 % 9 11 2238

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.