Sequence Similarity Clusters for the Entities in PDB 2WII

Entity #1 | Chains: A
COMPLEMENT C3 BETA CHAIN protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 18 1272
95 % 5 25 1246 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 5 25 1272
70 % 5 25 1303
50 % 5 25 1360
40 % 6 28 1250
30 % 6 28 1224
Entity #2 | Chains: B
COMPLEMENT C3B ALPHA' CHAIN protein, length: 915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3655
95 % 3 18 1920 Flexibility: Medium
Max RMSD: 31.0, Avg RMSD: 7.1
PDBFlex
90 % 3 18 1963
70 % 3 18 1979
50 % 3 18 1997
40 % 3 18 1994
30 % 3 18 1923
Entity #3 | Chains: C
COMPLEMENT FACTOR H protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58966
95 % 1 1 41978
90 % 1 1 40059
70 % 1 1 35519
50 % 1 1 30305
40 % 1 1 26738
30 % 1 1 22690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures