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INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME). THIS FILE CONTAINS THE 30S SUBUNIT.
Sequence Clustering and Redundancy Reduction Results
2WH3
Sequence Clusters for the Sequence Entities in PDB 2WH3
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 252 29
95% 138 254 48
90% 138 254 51
70% 138 254 63
50% 183 369 34
40% 183 369 48
30% 183 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 255 27
95% 138 255 44
90% 138 255 47
70% 138 255 59
50% 177 363 42
40% 181 403 39
30% 181 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 224 37
95% 138 262 36
90% 138 262 38
70% 177 375 24
50% 177 375 33
40% 177 375 47
30% 177 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 256 24
95% 138 256 42
90% 138 256 45
70% 138 256 57
50% 177 365 39
40% 177 365 53
30% 179 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 254 28
95% 138 254 49
90% 138 254 52
70% 138 254 64
50% 138 254 99
40% 138 254 124
30% 138 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 258 21
95% 142 263 35
90% 142 263 37
70% 142 263 48
50% 184 376 32
40% 184 376 45
30% 184 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 250 31
95% 138 255 46
90% 138 255 49
70% 138 255 61
50% 138 255 97
40% 138 255 122
30% 177 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 157 62
95% 137 249 51
90% 138 253 53
70% 138 253 65
50% 138 253 100
40% 138 253 126
30% 138 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 172 49
95% 132 221 64
90% 132 221 68
70% 132 221 81
50% 132 221 116
40% 132 221 144
30% 132 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 223 38
95% 132 223 63
90% 132 223 67
70% 132 223 80
50% 178 366 38
40% 178 366 52
30% 178 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 255 25
95% 138 256 39
90% 138 256 43
70% 138 256 55
50% 138 256 96
40% 177 363 55
30% 177 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 193 43
95% 138 254 47
90% 138 254 50
70% 138 254 62
50% 138 254 98
40% 138 254 123
30% 138 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 238 34
95% 138 238 55
90% 138 238 59
70% 138 238 71
50% 138 238 110
40% 138 238 133
30% 138 238 153
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - PEPTIDE CHAIN RELEASE FACTOR 2 protein, length: 351 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 25669
95% 5 10 4896
90% 5 10 4916
70% 5 10 4844
50% 5 10 4624
40% 8 22 1832
30% 8 22 1769
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 219 39
95% 131 219 66
90% 131 219 70
70% 131 219 83
50% 146 282 81
40% 146 282 101
30% 146 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 248 32
95% 138 256 40
90% 138 256 44
70% 138 256 56
50% 177 363 40
40% 177 364 54
30% 177 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 255 26
95% 138 255 43
90% 138 255 46
70% 138 255 58
50% 178 367 37
40% 178 367 51
30% 178 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 260 18
95% 146 266 34
90% 146 266 36
70% 146 266 47
50% 146 266 88
40% 146 266 112
30% 172 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 259 20
95% 139 260 37
90% 139 260 39
70% 139 260 51
50% 165 308 57
40% 165 309 74
30% 165 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 255 23
95% 138 255 41
90% 139 259 40
70% 139 259 52
50% 180 369 36
40% 181 371 49
30% 184 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 113 134
95% 138 255 45
90% 138 255 48
70% 138 255 60
50% 177 363 41
40% 177 363 56
30% 179 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.