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INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME). THIS FILE CONTAINS THE 30S SUBUNIT.
Sequence Clustering and Redundancy Reduction Results
2WH3
Sequence Clusters for the Sequence Entities in PDB 2WH3
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 265 27
95% 147 267 47
90% 147 267 49
70% 147 267 59
50% 194 384 34
40% 194 384 46
30% 194 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 268 25
95% 147 268 43
90% 147 268 45
70% 147 268 55
50% 188 378 41
40% 226 454 34
30% 226 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 237 35
95% 147 275 35
90% 147 275 37
70% 188 390 24
50% 188 390 33
40% 188 390 45
30% 188 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 269 22
95% 147 269 41
90% 147 269 43
70% 147 269 53
50% 188 380 38
40% 188 380 51
30% 224 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 267 26
95% 147 267 48
90% 147 267 50
70% 147 267 60
50% 147 267 94
40% 147 267 119
30% 147 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 271 20
95% 151 276 32
90% 151 276 34
70% 151 276 47
50% 195 391 32
40% 195 391 43
30% 195 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 263 28
95% 147 268 45
90% 147 268 47
70% 147 268 57
50% 147 268 92
40% 147 268 117
30% 188 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 170 54
95% 146 262 49
90% 147 266 51
70% 147 266 61
50% 147 266 95
40% 147 266 120
30% 147 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 183 48
95% 141 232 61
90% 141 232 64
70% 141 232 78
50% 141 232 116
40% 141 232 139
30% 141 232 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 234 37
95% 141 234 59
90% 141 234 63
70% 141 234 77
50% 189 381 37
40% 189 381 49
30% 189 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 268 23
95% 147 269 38
90% 147 269 41
70% 147 269 51
50% 147 269 91
40% 188 378 53
30% 188 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 206 42
95% 147 267 46
90% 147 267 48
70% 147 267 58
50% 147 267 93
40% 147 267 118
30% 147 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 249 34
95% 147 249 53
90% 147 249 55
70% 147 249 68
50% 147 249 105
40% 147 249 132
30% 147 249 151
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - PEPTIDE CHAIN RELEASE FACTOR 2 protein, length: 351 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 26141
95% 5 10 4998
90% 5 10 5017
70% 5 10 4942
50% 5 10 4702
40% 8 22 1885
30% 8 22 1810
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 230 38
95% 140 230 63
90% 140 230 66
70% 140 230 80
50% 155 293 74
40% 155 293 99
30% 155 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 261 29
95% 147 269 39
90% 147 269 42
70% 147 269 52
50% 188 378 39
40% 188 379 52
30% 188 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 268 24
95% 147 268 42
90% 147 268 44
70% 147 268 54
50% 189 382 36
40% 189 382 48
30% 189 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 273 18
95% 155 279 29
90% 155 279 30
70% 155 279 44
50% 155 279 86
40% 155 279 108
30% 183 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 272 19
95% 148 273 36
90% 148 273 38
70% 148 273 49
50% 176 323 56
40% 176 324 74
30% 176 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 268 21
95% 147 268 40
90% 148 272 39
70% 148 272 50
50% 191 384 35
40% 192 386 47
30% 229 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 113 155
95% 147 268 44
90% 147 268 46
70% 147 268 56
50% 188 378 40
40% 188 378 54
30% 224 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.