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An Information Portal to 105025 Biological Macromolecular Structures

INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME
Sequence Clustering and Redundancy Reduction Results
2WH1
Sequence Clusters for the Sequence Entities in PDB 2WH1
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 265 27
95% 146 267 47
90% 146 267 49
70% 146 267 59
50% 193 384 34
40% 193 384 46
30% 193 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 268 25
95% 146 268 43
90% 146 268 45
70% 146 268 55
50% 187 378 41
40% 225 454 34
30% 225 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 237 35
95% 146 275 35
90% 146 275 37
70% 187 390 24
50% 187 390 33
40% 187 390 45
30% 187 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 269 22
95% 146 269 41
90% 146 269 43
70% 146 269 53
50% 187 380 38
40% 187 380 51
30% 223 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 267 26
95% 146 267 48
90% 146 267 50
70% 146 267 60
50% 146 267 93
40% 146 267 119
30% 146 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 271 20
95% 150 276 32
90% 150 276 34
70% 150 276 47
50% 194 391 32
40% 194 391 43
30% 194 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 263 28
95% 146 268 45
90% 146 268 47
70% 146 268 57
50% 146 268 91
40% 146 268 117
30% 187 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 170 54
95% 145 262 49
90% 146 266 51
70% 146 266 61
50% 146 266 94
40% 146 266 120
30% 146 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 183 48
95% 140 232 61
90% 140 232 64
70% 140 232 78
50% 140 232 115
40% 140 232 139
30% 140 232 160
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 234 37
95% 140 234 59
90% 140 234 63
70% 140 234 77
50% 188 381 37
40% 188 381 49
30% 188 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 268 23
95% 146 269 38
90% 146 269 41
70% 146 269 51
50% 146 269 90
40% 187 378 53
30% 187 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 206 42
95% 146 267 46
90% 146 267 48
70% 146 267 58
50% 146 267 92
40% 146 267 118
30% 146 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 249 34
95% 146 249 53
90% 146 249 55
70% 146 249 67
50% 146 249 104
40% 146 249 132
30% 146 249 151
Entity #22: Chains: V,W - E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA rna, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - PEPTIDE CHAIN RELEASE FACTOR 2 protein, length: 351 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 26098
95% 4 10 4989
90% 4 10 5007
70% 4 10 4933
50% 4 10 4695
40% 7 22 1882
30% 7 22 1806
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 230 38
95% 139 230 63
90% 139 230 66
70% 139 230 80
50% 154 293 73
40% 154 293 99
30% 154 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 261 29
95% 146 269 39
90% 146 269 42
70% 146 269 52
50% 187 378 39
40% 187 379 52
30% 187 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 268 24
95% 146 268 42
90% 146 268 44
70% 146 268 54
50% 188 382 36
40% 188 382 48
30% 188 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 273 18
95% 154 279 29
90% 154 279 30
70% 154 279 44
50% 154 279 84
40% 154 279 106
30% 182 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 272 19
95% 147 273 36
90% 147 273 38
70% 147 273 49
50% 175 323 56
40% 175 324 73
30% 175 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 268 21
95% 146 268 40
90% 147 272 39
70% 147 272 50
50% 190 384 35
40% 191 386 47
30% 228 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 113 150
95% 146 268 44
90% 146 268 46
70% 146 268 56
50% 187 378 40
40% 187 378 54
30% 223 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.