POP-OUT | CLOSE
 
STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I.
Sequence Clustering and Redundancy Reduction Results
2WDK
Sequence Clusters for the Sequence Entities in PDB 2WDK
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 252 29
95% 143 254 48
90% 143 254 51
70% 143 254 63
50% 188 369 34
40% 188 369 47
30% 188 374 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 255 27
95% 143 255 44
90% 143 255 47
70% 143 255 59
50% 182 363 42
40% 186 403 39
30% 186 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 224 37
95% 143 262 36
90% 143 262 38
70% 182 375 24
50% 182 375 33
40% 182 375 46
30% 182 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 256 24
95% 143 256 42
90% 143 256 45
70% 143 256 57
50% 182 365 39
40% 182 365 53
30% 184 401 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 254 28
95% 143 254 49
90% 143 254 52
70% 143 254 64
50% 143 254 98
40% 143 254 123
30% 143 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 258 21
95% 147 263 35
90% 147 263 37
70% 147 263 48
50% 189 376 32
40% 189 376 44
30% 189 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 250 30
95% 143 255 46
90% 143 255 49
70% 143 255 61
50% 143 255 96
40% 143 255 121
30% 182 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 157 62
95% 142 249 51
90% 143 253 53
70% 143 253 65
50% 143 253 99
40% 143 253 125
30% 143 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 172 49
95% 137 221 64
90% 137 221 68
70% 137 221 81
50% 137 221 116
40% 137 221 144
30% 137 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 223 38
95% 137 223 63
90% 137 223 67
70% 137 223 80
50% 183 366 38
40% 183 366 52
30% 183 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 255 25
95% 143 256 39
90% 143 256 43
70% 143 256 55
50% 143 256 95
40% 182 363 55
30% 182 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 193 43
95% 143 254 47
90% 143 254 50
70% 143 254 62
50% 143 254 97
40% 143 254 122
30% 143 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 238 34
95% 143 238 55
90% 143 238 59
70% 143 238 71
50% 143 238 110
40% 143 238 133
30% 143 238 153
Entity #22: Chains: V,Y - P AND A-SITE PHE-TRNA PHE rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - E-SITE TRNA PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - MRNA rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 219 39
95% 136 219 66
90% 136 219 70
70% 136 219 83
50% 151 282 81
40% 151 282 101
30% 151 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 248 32
95% 143 256 40
90% 143 256 44
70% 143 256 56
50% 182 363 40
40% 182 364 54
30% 182 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 255 26
95% 143 255 43
90% 143 255 46
70% 143 255 58
50% 183 367 37
40% 183 367 51
30% 183 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 260 18
95% 151 266 34
90% 151 266 36
70% 151 266 47
50% 151 266 88
40% 151 266 112
30% 177 313 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 259 20
95% 144 260 37
90% 144 260 39
70% 144 260 51
50% 170 308 57
40% 170 309 73
30% 170 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 255 23
95% 143 255 41
90% 144 259 40
70% 144 259 52
50% 185 369 36
40% 186 371 48
30% 189 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 113 133
95% 143 255 45
90% 143 255 48
70% 143 255 60
50% 182 363 41
40% 182 363 56
30% 184 399 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.