Sequence Similarity Clusters for the Entities in PDB 2W81

Entity #1 | Chains: A,B,E
COMPLEMENT FACTOR H protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 2641
95 % 4 6 3289 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 6 3337
70 % 4 6 3312
50 % 5 7 3103
40 % 6 8 2755
30 % 6 8 2582
Entity #2 | Chains: C,D,F
FACTOR H BINDING PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5625
95 % 5 8 3693 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 6 9 3293
70 % 9 14 2199
50 % 9 14 2182
40 % 9 14 2171
30 % 9 14 2079

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.