Sequence Similarity Clusters for the Entities in PDB 2W81

Entity #1 | Chains: A,B,E
COMPLEMENT FACTOR H protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 2699
95 % 4 6 3348 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 4 6 3398
70 % 4 6 3361
50 % 5 7 3149
40 % 6 8 2792
30 % 6 8 2617
Entity #2 | Chains: C,D,F
FACTOR H BINDING PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5724
95 % 5 8 3746 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 6 9 3353
70 % 9 14 2232
50 % 9 14 2213
40 % 9 14 2199
30 % 9 14 2103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.