Sequence Similarity Clusters for the Entities in PDB 2W81

Entity #1 | Chains: A,B,E
COMPLEMENT FACTOR H protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 3106
95 % 4 6 3420 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 6 3481
70 % 4 6 3411
50 % 5 7 3131
40 % 6 8 2795
30 % 24 58 545
Entity #2 | Chains: C,D,F
FACTOR H BINDING PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 5047
95 % 8 12 2294 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1879
70 % 12 19 1462
50 % 12 19 1492
40 % 12 19 1476
30 % 12 19 1464

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures