Sequence Similarity Clusters for the Entities in PDB 2W80

Entity #1 | Chains: A,B,E,G
COMPLEMENT FACTOR H protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3172
95 % 3 6 3475 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 6 3537
70 % 3 6 3468
50 % 4 7 3177
40 % 5 8 2831
30 % 20 58 553
Entity #2 | Chains: C,D,F,H
FACTOR H BINDING PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5128
95 % 6 12 2334 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 7 14 1908
70 % 10 19 1483
50 % 10 19 1513
40 % 10 19 1498
30 % 10 19 1485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures