Sequence Similarity Clusters for the Entities in PDB 2W80

Entity #1 | Chains: A,B,E,G
COMPLEMENT FACTOR H protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3265
95 % 3 6 3560 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 6 3620
70 % 3 6 3565
50 % 4 7 3257
40 % 5 8 2892
30 % 20 58 563
Entity #2 | Chains: C,D,F,H
FACTOR H BINDING PROTEIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5280
95 % 6 12 2385 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 7 14 1958
70 % 10 19 1534
50 % 10 19 1554
40 % 10 19 1540
30 % 10 19 1523

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures