Sequence Similarity Clusters for the Entities in PDB 2VV4

Entity #1 | Chains: A
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 161 91
95 % 106 169 117 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 106 169 121
70 % 106 169 136
50 % 144 226 104
40 % 144 226 128
30 % 707 1020 10
Entity #2 | Chains: B
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59016
95 % 107 169 117
90 % 107 169 121
70 % 107 169 136
50 % 145 226 104
40 % 145 226 128
30 % 708 1020 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures