Sequence Similarity Clusters for the Entities in PDB 2VV4

Entity #1 | Chains: A
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 160 85
95 % 105 168 114 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 105 168 118
70 % 105 168 133
50 % 143 225 103
40 % 143 225 127
30 % 701 1006 10
Entity #2 | Chains: B
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58250
95 % 106 168 114
90 % 106 168 118
70 % 106 168 133
50 % 144 225 103
40 % 144 225 127
30 % 702 1006 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures