Sequence Similarity Clusters for the Entities in PDB 2VV1

Entity #1 | Chains: A
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 155 87
95 % 75 163 116
90 % 75 163 121
70 % 75 163 137
50 % 111 220 105
40 % 111 220 128
30 % 621 992 10
Entity #2 | Chains: B
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57381
95 % 76 163 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.7
PDBFlex
90 % 76 163 121
70 % 76 163 137
50 % 112 220 105
40 % 112 220 128
30 % 622 992 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures