Sequence Similarity Clusters for the Entities in PDB 2VUM

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 109 204
95 % 61 109 285
90 % 61 109 298
70 % 61 109 321
50 % 61 111 331
40 % 61 111 363
30 % 61 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 119 161
95 % 65 119 223
90 % 65 119 234
70 % 65 121 256
50 % 66 129 257
40 % 66 129 277
30 % 66 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 111 198
95 % 61 111 281
90 % 61 111 294
70 % 61 111 317
50 % 61 111 341
40 % 61 112 362
30 % 61 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 117 165
95 % 65 117 233
90 % 65 117 243
70 % 65 117 272
50 % 65 117 308
40 % 65 117 335
30 % 65 117 345
Entity #13 | Chains: M
ALPHA-AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: N
5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: P
5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 110 200
95 % 61 111 279
90 % 61 111 292
70 % 61 111 314
50 % 61 113 328
40 % 62 121 314
30 % 62 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 108 207
95 % 61 108 289
90 % 61 108 302
70 % 61 108 323
50 % 61 109 342
40 % 61 109 373
30 % 61 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 55 452
95 % 32 55 647
90 % 32 55 682
70 % 32 56 723
50 % 32 58 779
40 % 32 58 803
30 % 32 58 797
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 120 158
95 % 66 120 218
90 % 66 120 229
70 % 66 120 262
50 % 66 121 293
40 % 66 122 313
30 % 66 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 116 167
95 % 65 116 236
90 % 65 116 245
70 % 65 116 275
50 % 65 119 298
40 % 65 119 325
30 % 65 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 58 396
95 % 33 58 588
90 % 33 58 621
70 % 33 58 668
50 % 34 61 679
40 % 34 61 713
30 % 34 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 119 160
95 % 65 120 220
90 % 65 120 231
70 % 65 120 264
50 % 65 120 299
40 % 65 120 326
30 % 65 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 110 203
95 % 61 110 284
90 % 61 110 297
70 % 61 110 320
50 % 61 111 333
40 % 61 111 365
30 % 61 114 365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.