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Alpha-amanitin inhibited complete RNA polymerase II elongation complex
Sequence Clustering and Redundancy Reduction Results
2VUM
Sequence Clusters for the Sequence Entities in PDB 2VUM
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 101 206
95% 57 101 290
90% 57 101 305
70% 57 101 324
50% 57 102 349
40% 57 102 376
30% 57 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 107 188
95% 61 107 266
90% 61 107 278
70% 61 108 289
50% 62 116 275
40% 62 116 305
30% 62 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 103 201
95% 57 103 286
90% 57 103 301
70% 57 103 318
50% 57 103 353
40% 57 104 370
30% 57 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 106 190
95% 61 106 268
90% 61 106 282
70% 61 106 300
50% 61 106 328
40% 61 106 358
30% 61 106 366
Entity #13: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: N - 5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 102 203
95% 57 103 283
90% 57 103 297
70% 57 103 316
50% 57 104 340
40% 58 112 319
30% 58 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 101 207
95% 57 101 291
90% 57 101 306
70% 57 101 325
50% 57 102 351
40% 57 102 379
30% 57 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 51 452
95% 30 51 656
90% 30 51 689
70% 30 52 733
50% 30 52 822
40% 30 52 841
30% 30 52 847
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 108 186
95% 62 108 259
90% 62 108 272
70% 62 108 291
50% 62 109 309
40% 62 109 337
30% 62 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 105 194
95% 61 105 277
90% 61 105 289
70% 61 105 307
50% 61 107 320
40% 61 107 352
30% 61 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 53 427
95% 31 53 625
90% 31 53 655
70% 31 53 705
50% 32 55 701
40% 32 55 729
30% 32 55 730
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 107 187
95% 61 108 260
90% 61 108 273
70% 61 108 292
50% 61 108 321
40% 61 108 353
30% 61 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 102 205
95% 57 102 289
90% 57 102 304
70% 57 102 323
50% 57 103 347
40% 57 103 374
30% 57 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.