Sequence Similarity Clusters for the Entities in PDB 2VQF

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 253 35
95 % 72 254 48
90 % 72 254 53
70 % 72 254 63
50 % 90 356 28
40 % 90 356 38
30 % 98 429 35
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 255 33
95 % 72 255 43
90 % 72 255 48
70 % 72 255 57
50 % 84 350 35
40 % 94 430 21
30 % 94 431 34
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 207 46
95 % 72 262 35
90 % 72 262 40
70 % 84 361 23
50 % 84 362 27
40 % 84 362 37
30 % 84 362 56
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 256 31
95 % 72 256 41
90 % 72 256 46
70 % 72 256 55
50 % 84 355 32
40 % 84 355 43
30 % 92 430 38
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 254 34
95 % 72 254 49
90 % 72 254 54
70 % 72 255 60
50 % 72 255 86
40 % 72 255 107
30 % 72 255 119
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 258 27
95 % 74 263 34
90 % 74 263 39
70 % 74 263 48
50 % 89 363 26
40 % 89 364 36
30 % 89 364 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 250 36
95 % 72 255 45
90 % 72 255 50
70 % 72 255 59
50 % 72 255 85
40 % 72 256 106
30 % 84 353 61
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 87 224
95 % 72 249 51
90 % 72 253 55
70 % 72 253 64
50 % 72 253 88
40 % 72 253 109
30 % 72 253 122
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 51 608
95 % 66 220 63
90 % 66 220 68
70 % 66 220 78
50 % 66 220 108
40 % 66 220 131
30 % 66 220 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 258 26
95 % 73 258 37
90 % 73 258 43
70 % 73 258 52
50 % 85 353 31
40 % 85 353 41
30 % 85 353 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 255 28
95 % 72 256 38
90 % 72 256 44
70 % 72 256 53
50 % 84 349 34
40 % 84 350 44
30 % 84 350 60
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 372
95 % 72 254 47
90 % 72 254 52
70 % 72 254 62
50 % 72 254 87
40 % 72 254 108
30 % 72 254 120
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 245 38
95 % 72 245 53
90 % 72 245 57
70 % 72 245 68
50 % 72 245 93
40 % 72 245 117
30 % 72 245 131
Entity #22 | Chains: X
5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 219 44
95 % 66 219 64
90 % 66 219 69
70 % 66 219 79
50 % 69 273 78
40 % 69 273 99
30 % 69 273 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 248 37
95 % 72 256 39
90 % 72 256 45
70 % 72 256 54
50 % 84 350 33
40 % 84 351 42
30 % 84 351 59
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 255 32
95 % 72 255 42
90 % 72 255 47
70 % 72 255 56
50 % 85 354 30
40 % 85 354 40
30 % 85 356 57
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 260 24
95 % 79 266 33
90 % 79 266 36
70 % 79 266 45
50 % 79 266 83
40 % 79 266 101
30 % 90 309 77
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 259 25
95 % 73 260 36
90 % 73 260 41
70 % 73 260 50
50 % 83 309 53
40 % 83 310 66
30 % 83 310 86
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 255 30
95 % 73 255 40
90 % 73 259 42
70 % 73 259 51
50 % 87 356 29
40 % 88 358 39
30 % 97 434 32
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 91 196
95 % 72 255 44
90 % 72 255 49
70 % 72 255 58
50 % 84 350 36
40 % 84 350 45
30 % 92 425 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.