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An Information Portal to 109274 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQF
Sequence Clusters for the Sequence Entities in PDB 2VQF
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 207 25
95% 47 208 44
90% 47 208 47
70% 47 208 57
50% 60 293 35
40% 60 293 45
30% 68 345 45
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 209 23
95% 47 209 40
90% 47 209 43
70% 47 209 52
50% 54 287 41
40% 64 346 32
30% 64 347 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 172 33
95% 47 216 30
90% 47 216 33
70% 54 298 24
50% 54 299 34
40% 54 299 44
30% 54 299 66
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 210 20
95% 47 210 38
90% 47 210 41
70% 47 210 50
50% 54 292 39
40% 54 292 49
30% 62 346 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 208 24
95% 47 208 45
90% 47 208 48
70% 47 209 55
50% 47 209 82
40% 47 209 108
30% 47 209 125
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 212 18
95% 49 217 29
90% 49 217 32
70% 49 217 42
50% 59 300 33
40% 59 301 43
30% 59 301 64
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 204 26
95% 47 209 42
90% 47 209 45
70% 47 209 54
50% 47 209 81
40% 47 210 107
30% 54 290 73
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 80 223
95% 47 203 47
90% 47 207 49
70% 47 207 58
50% 47 207 84
40% 47 207 111
30% 47 207 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 49 516
95% 44 183 53
90% 44 183 56
70% 44 183 70
50% 44 183 115
40% 44 183 138
30% 44 183 156
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 212 17
95% 48 212 33
90% 48 212 37
70% 48 212 46
50% 55 290 38
40% 55 290 48
30% 55 290 70
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 209 21
95% 47 210 35
90% 47 210 39
70% 47 210 48
50% 54 286 43
40% 54 287 51
30% 54 287 72
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 49 363
95% 47 208 43
90% 47 208 46
70% 47 208 56
50% 47 208 83
40% 47 208 109
30% 47 208 126
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 199 31
95% 47 199 49
90% 47 199 51
70% 47 199 62
50% 47 199 94
40% 47 199 117
30% 47 199 141
Entity #22: Chains: X - 5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 182 35
95% 44 182 54
90% 44 182 57
70% 44 182 71
50% 46 223 76
40% 46 223 101
30% 46 223 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 202 27
95% 47 210 36
90% 47 210 40
70% 47 210 49
50% 54 287 40
40% 54 288 50
30% 54 288 71
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 209 22
95% 47 209 39
90% 47 209 42
70% 47 209 51
50% 55 291 37
40% 55 291 47
30% 55 293 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 214 15
95% 54 220 26
90% 54 220 31
70% 54 220 41
50% 54 220 78
40% 54 220 102
30% 61 259 82
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 213 16
95% 48 214 32
90% 48 214 35
70% 48 214 44
50% 54 257 52
40% 54 258 66
30% 54 258 86
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 209 19
95% 48 209 37
90% 48 213 36
70% 48 213 45
50% 57 293 36
40% 58 295 46
30% 67 350 42
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 90 160
95% 47 209 41
90% 47 209 44
70% 47 209 53
50% 54 287 42
40% 54 287 52
30% 62 341 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.