POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQF
Sequence Clusters for the Sequence Entities in PDB 2VQF
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 187 27
95% 38 188 47
90% 38 188 50
70% 38 188 60
50% 50 269 34
40% 50 269 46
30% 50 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 189 25
95% 38 189 43
90% 38 189 46
70% 38 189 56
50% 44 263 41
40% 54 316 35
30% 54 316 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 158 35
95% 38 196 35
90% 38 196 37
70% 44 275 24
50% 44 275 33
40% 44 275 45
30% 44 275 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 190 22
95% 38 190 41
90% 38 190 44
70% 38 190 54
50% 44 268 38
40% 44 268 51
30% 52 317 50
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 188 26
95% 38 188 48
90% 38 188 51
70% 38 188 61
50% 38 188 94
40% 38 188 119
30% 38 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 192 20
95% 40 197 33
90% 40 197 35
70% 40 197 47
50% 49 276 32
40% 49 276 43
30% 49 276 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 184 28
95% 38 189 45
90% 38 189 48
70% 38 189 58
50% 38 189 92
40% 38 189 117
30% 44 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 79 221
95% 38 183 49
90% 38 187 52
70% 38 187 62
50% 38 187 95
40% 38 187 120
30% 38 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 49 492
95% 35 168 61
90% 35 168 64
70% 35 168 80
50% 35 168 117
40% 35 168 139
30% 35 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 170 37
95% 36 170 59
90% 36 170 63
70% 36 170 78
50% 45 266 37
40% 45 266 49
30% 45 266 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 189 23
95% 38 190 38
90% 38 190 42
70% 38 190 52
50% 38 190 91
40% 44 263 53
30% 44 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 48 365
95% 38 188 46
90% 38 188 49
70% 38 188 59
50% 38 188 93
40% 38 188 118
30% 38 188 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 179 34
95% 38 179 53
90% 38 179 55
70% 38 179 68
50% 38 179 105
40% 38 179 132
30% 38 179 151
Entity #22: Chains: X - 5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 166 38
95% 35 166 63
90% 35 166 66
70% 35 166 82
50% 37 206 75
40% 37 206 100
30% 37 206 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 182 29
95% 38 190 39
90% 38 190 43
70% 38 190 53
50% 44 263 39
40% 44 264 52
30% 44 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 189 24
95% 38 189 42
90% 38 189 45
70% 38 189 55
50% 45 267 36
40% 45 267 48
30% 45 269 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 194 18
95% 45 200 29
90% 45 200 30
70% 45 200 44
50% 45 200 86
40% 45 200 108
30% 51 236 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 193 19
95% 39 194 36
90% 39 194 38
70% 39 194 49
50% 44 234 56
40% 44 235 74
30% 44 235 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 189 21
95% 39 189 40
90% 39 193 39
70% 39 193 51
50% 47 269 35
40% 48 271 47
30% 57 321 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 87 155
95% 38 189 44
90% 38 189 47
70% 38 189 57
50% 44 263 40
40% 44 263 54
30% 52 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.