Sequence Similarity Clusters for the Entities in PDB 2VQF

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 254 36
95 % 72 255 49
90 % 72 255 54
70 % 72 255 64
50 % 93 366 28
40 % 93 366 38
30 % 101 440 36
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 256 34
95 % 72 256 45
90 % 72 256 50
70 % 72 256 59
50 % 87 360 35
40 % 97 442 20
30 % 97 443 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 208 46
95 % 72 263 36
90 % 72 263 41
70 % 87 371 21
50 % 87 372 27
40 % 87 372 37
30 % 87 372 57
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 257 32
95 % 72 257 43
90 % 72 257 48
70 % 72 257 57
50 % 87 365 32
40 % 87 365 44
30 % 95 441 39
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 255 35
95 % 72 255 50
90 % 72 255 55
70 % 72 256 62
50 % 72 256 88
40 % 72 256 108
30 % 72 256 120
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 259 29
95 % 74 264 35
90 % 74 264 40
70 % 74 264 50
50 % 92 373 26
40 % 92 374 36
30 % 92 374 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 251 37
95 % 72 256 47
90 % 72 256 52
70 % 72 256 61
50 % 72 256 87
40 % 72 257 107
30 % 87 363 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 87 225
95 % 72 250 51
90 % 72 254 56
70 % 72 254 66
50 % 72 254 90
40 % 72 254 112
30 % 72 254 124
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 51 616
95 % 66 221 64
90 % 66 221 69
70 % 66 221 79
50 % 66 221 111
40 % 66 221 132
30 % 66 221 143
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 259 27
95 % 73 259 38
90 % 73 259 44
70 % 73 259 53
50 % 88 363 31
40 % 88 363 42
30 % 88 363 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 256 30
95 % 72 257 39
90 % 72 257 45
70 % 72 257 54
50 % 87 359 34
40 % 87 360 45
30 % 87 360 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 384
95 % 72 255 48
90 % 72 255 53
70 % 72 255 63
50 % 72 255 89
40 % 72 255 111
30 % 72 255 123
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 246 39
95 % 72 246 54
90 % 72 246 59
70 % 72 246 69
50 % 72 246 96
40 % 72 246 119
30 % 72 246 133
Entity #22 | Chains: X
5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 220 45
95 % 66 220 65
90 % 66 220 70
70 % 66 220 80
50 % 69 280 77
40 % 69 280 99
30 % 69 280 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 249 38
95 % 72 257 40
90 % 72 257 46
70 % 72 257 55
50 % 87 360 33
40 % 87 361 43
30 % 87 361 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 256 33
95 % 72 256 44
90 % 72 256 49
70 % 72 256 58
50 % 88 364 30
40 % 88 364 41
30 % 88 366 58
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 261 25
95 % 79 267 34
90 % 79 267 37
70 % 79 267 46
50 % 79 267 84
40 % 79 267 103
30 % 93 313 82
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 260 26
95 % 73 261 37
90 % 73 261 42
70 % 73 261 51
50 % 86 313 56
40 % 86 314 74
30 % 86 314 95
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 256 31
95 % 73 256 42
90 % 73 260 43
70 % 73 260 52
50 % 90 366 29
40 % 91 368 39
30 % 100 447 31
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 91 198
95 % 72 256 46
90 % 72 256 51
70 % 72 256 60
50 % 87 360 36
40 % 87 360 46
30 % 95 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.