Sequence Similarity Clusters for the Entities in PDB 2VQF

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 269 39
95 % 75 270 53
90 % 75 270 58
70 % 75 270 68
50 % 96 421 26
40 % 96 421 38
30 % 105 528 32
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 271 35
95 % 75 271 49
90 % 75 271 54
70 % 75 271 64
50 % 90 415 32
40 % 101 537 19
30 % 101 537 31
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 217 51
95 % 75 278 39
90 % 75 278 44
70 % 90 422 19
50 % 90 432 24
40 % 90 432 35
30 % 90 432 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 272 33
95 % 75 272 46
90 % 75 272 51
70 % 75 272 62
50 % 90 419 31
40 % 90 419 43
30 % 99 527 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 270 36
95 % 75 270 54
90 % 75 270 59
70 % 75 279 54
50 % 75 279 90
40 % 75 279 113
30 % 75 279 123
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 274 30
95 % 77 279 38
90 % 77 279 43
70 % 77 279 53
50 % 95 428 25
40 % 95 433 34
30 % 95 433 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 266 41
95 % 75 271 51
90 % 75 271 56
70 % 75 271 66
50 % 75 278 91
40 % 75 278 114
30 % 90 413 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 87 258
95 % 75 265 56
90 % 75 269 60
70 % 75 269 69
50 % 75 269 94
40 % 75 269 117
30 % 75 269 128
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 51 719
95 % 69 236 65
90 % 69 236 69
70 % 69 236 81
50 % 69 236 111
40 % 69 236 135
30 % 69 236 144
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 274 29
95 % 76 274 42
90 % 76 274 48
70 % 76 274 58
50 % 91 421 28
40 % 91 424 40
30 % 91 424 57
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 271 31
95 % 75 272 43
90 % 75 272 49
70 % 75 272 59
50 % 90 409 36
40 % 90 414 45
30 % 90 414 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 524
95 % 75 270 52
90 % 75 270 57
70 % 75 270 67
50 % 75 270 93
40 % 75 270 116
30 % 75 270 127
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 261 43
95 % 75 261 59
90 % 75 261 63
70 % 75 261 74
50 % 75 261 98
40 % 75 261 121
30 % 75 261 133
Entity #22 | Chains: X
5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 235 48
95 % 69 235 66
90 % 69 235 70
70 % 69 235 82
50 % 72 309 84
40 % 72 309 103
30 % 72 309 116
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 264 42
95 % 75 272 44
90 % 75 272 50
70 % 75 272 60
50 % 90 416 29
40 % 90 421 41
30 % 90 421 58
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 271 34
95 % 75 271 48
90 % 75 271 53
70 % 75 271 63
50 % 91 417 30
40 % 91 417 42
30 % 91 419 60
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 276 27
95 % 82 282 37
90 % 82 282 42
70 % 82 282 51
50 % 82 282 88
40 % 82 282 110
30 % 96 355 95
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 275 28
95 % 76 276 41
90 % 76 276 46
70 % 76 276 56
50 % 89 356 66
40 % 89 361 84
30 % 89 361 96
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 271 32
95 % 76 271 45
90 % 76 275 47
70 % 76 275 57
50 % 93 421 27
40 % 94 427 37
30 % 104 542 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 91 220
95 % 75 271 50
90 % 75 271 55
70 % 75 271 65
50 % 90 411 35
40 % 90 411 48
30 % 99 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.