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An Information Portal to 105906 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQF
Sequence Clusters for the Sequence Entities in PDB 2VQF
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 189 28
95% 38 190 47
90% 38 190 50
70% 38 190 60
50% 50 271 34
40% 50 271 46
30% 50 276 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 191 26
95% 38 191 43
90% 38 191 45
70% 38 191 56
50% 44 265 41
40% 54 318 35
30% 54 318 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 160 35
95% 38 198 34
90% 38 198 36
70% 44 277 24
50% 44 277 33
40% 44 277 45
30% 44 277 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 192 23
95% 38 192 40
90% 38 192 43
70% 38 192 54
50% 44 270 38
40% 44 270 51
30% 52 319 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 190 27
95% 38 190 48
90% 38 190 51
70% 38 190 61
50% 38 190 94
40% 38 190 119
30% 38 190 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 194 21
95% 40 199 33
90% 40 199 35
70% 40 199 47
50% 49 278 32
40% 49 278 43
30% 49 278 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 186 29
95% 38 191 45
90% 38 191 48
70% 38 191 58
50% 38 191 92
40% 38 191 117
30% 44 268 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 79 223
95% 38 185 49
90% 38 189 52
70% 38 189 62
50% 38 189 95
40% 38 189 120
30% 38 189 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 49 494
95% 35 168 61
90% 35 168 64
70% 35 168 80
50% 35 168 117
40% 35 168 140
30% 35 168 163
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 170 37
95% 36 170 59
90% 36 170 63
70% 36 170 78
50% 45 268 37
40% 45 268 50
30% 45 268 74
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 191 24
95% 38 192 37
90% 38 192 41
70% 38 192 52
50% 38 192 91
40% 44 265 54
30% 44 265 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 48 363
95% 38 190 46
90% 38 190 49
70% 38 190 59
50% 38 190 93
40% 38 190 118
30% 38 190 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 181 34
95% 38 181 53
90% 38 181 55
70% 38 181 69
50% 38 181 105
40% 38 181 132
30% 38 181 151
Entity #22: Chains: X - 5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 167 38
95% 35 167 63
90% 35 167 66
70% 35 167 82
50% 37 206 77
40% 37 206 101
30% 37 206 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 184 30
95% 38 192 38
90% 38 192 42
70% 38 192 53
50% 44 265 39
40% 44 266 52
30% 44 266 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 191 25
95% 38 191 42
90% 38 191 44
70% 38 191 55
50% 45 269 36
40% 45 269 49
30% 45 271 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 196 19
95% 45 202 30
90% 45 202 31
70% 45 202 45
50% 45 202 84
40% 45 202 108
30% 51 239 93
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 195 20
95% 39 196 36
90% 39 196 38
70% 39 196 49
50% 44 237 56
40% 44 238 74
30% 44 238 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 191 22
95% 39 191 39
90% 39 195 39
70% 39 195 50
50% 47 271 35
40% 48 273 47
30% 57 323 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 89 144
95% 38 191 44
90% 38 191 46
70% 38 191 57
50% 44 265 40
40% 44 265 55
30% 52 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.