Sequence Similarity Clusters for the Entities in PDB 2VQF

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 252 35
95 % 72 253 47
90 % 72 253 52
70 % 72 253 62
50 % 86 348 28
40 % 86 348 38
30 % 94 418 37
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 254 33
95 % 72 254 43
90 % 72 254 48
70 % 72 254 57
50 % 80 342 36
40 % 90 419 22
30 % 90 420 35
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 206 44
95 % 72 261 35
90 % 72 261 39
70 % 80 353 23
50 % 80 354 27
40 % 80 354 37
30 % 80 354 56
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 255 30
95 % 72 255 41
90 % 72 255 46
70 % 72 255 55
50 % 80 347 33
40 % 80 347 45
30 % 88 419 42
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 253 34
95 % 72 253 48
90 % 72 253 53
70 % 72 254 60
50 % 72 254 86
40 % 72 254 106
30 % 72 254 118
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 257 27
95 % 74 262 33
90 % 74 262 37
70 % 74 262 48
50 % 85 355 26
40 % 85 356 36
30 % 85 356 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 249 36
95 % 72 254 45
90 % 72 254 50
70 % 72 254 59
50 % 72 254 85
40 % 72 255 105
30 % 80 345 62
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 87 221
95 % 72 248 50
90 % 72 252 54
70 % 72 252 63
50 % 72 252 88
40 % 72 252 108
30 % 72 252 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 51 579
95 % 66 219 62
90 % 66 219 66
70 % 66 219 77
50 % 66 219 107
40 % 66 219 128
30 % 66 219 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 257 26
95 % 73 257 37
90 % 73 257 43
70 % 73 257 52
50 % 81 345 31
40 % 81 345 42
30 % 81 345 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 254 28
95 % 72 255 38
90 % 72 255 44
70 % 72 255 53
50 % 80 341 35
40 % 80 342 46
30 % 80 342 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 366
95 % 72 253 46
90 % 72 253 51
70 % 72 253 61
50 % 72 253 87
40 % 72 253 107
30 % 72 253 119
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 244 38
95 % 72 244 54
90 % 72 244 57
70 % 72 244 67
50 % 72 244 91
40 % 72 244 113
30 % 72 244 126
Entity #22 | Chains: X
5'-R(*UP*UP*GP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 218 43
95 % 66 218 63
90 % 66 218 67
70 % 66 218 78
50 % 69 269 77
40 % 69 269 97
30 % 69 269 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 247 37
95 % 72 255 39
90 % 72 255 45
70 % 72 255 54
50 % 80 342 34
40 % 80 343 44
30 % 80 343 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 254 32
95 % 72 254 42
90 % 72 254 47
70 % 72 254 56
50 % 81 346 30
40 % 81 346 41
30 % 81 348 57
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 259 24
95 % 79 265 21
90 % 79 265 24
70 % 79 265 32
50 % 79 265 79
40 % 79 265 100
30 % 86 304 78
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 258 25
95 % 73 259 36
90 % 73 259 41
70 % 73 259 50
50 % 79 304 51
40 % 79 305 63
30 % 79 305 86
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 254 29
95 % 73 254 40
90 % 73 258 42
70 % 73 258 51
50 % 83 348 29
40 % 84 350 39
30 % 93 423 33
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 91 192
95 % 72 254 44
90 % 72 254 49
70 % 72 254 58
50 % 80 342 37
40 % 80 342 47
30 % 88 414 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.