Sequence Similarity Clusters for the Entities in PDB 2VQE

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 294 40
95 % 34 294 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 34 294 53
70 % 34 294 64
50 % 46 464 25
40 % 48 579 20
30 % 48 581 33
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 295 37
95 % 34 295 46 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 34 295 50
70 % 34 295 62
50 % 40 458 32
40 % 44 585 19
30 % 44 585 32
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 263 49
95 % 34 302 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 34 302 41
70 % 40 472 15
50 % 40 475 24
40 % 40 475 38
30 % 40 475 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 296 34
95 % 34 296 42
90 % 34 296 47
70 % 34 296 59
50 % 40 462 30
40 % 40 462 43
30 % 42 582 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 294 39
95 % 34 294 48
90 % 34 294 52
70 % 34 298 55
50 % 34 307 91
40 % 34 307 112
30 % 34 307 126
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 300 27
95 % 35 303 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 35 303 40
70 % 35 303 51
50 % 44 470 26
40 % 44 475 37
30 % 44 475 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 290 41
95 % 34 295 44 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 34 295 48
70 % 34 295 60
50 % 34 305 92
40 % 40 460 45
30 % 40 460 61
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 266 46
95 % 34 292 51
90 % 34 292 55
70 % 34 292 67
50 % 34 292 95
40 % 34 292 117
30 % 34 292 132
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 243 54
95 % 32 249 64 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 32 249 68
70 % 32 249 85
50 % 32 249 116
40 % 32 249 138
30 % 32 249 150
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 298 30
95 % 35 298 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 35 298 44
70 % 35 298 54
50 % 41 464 28
40 % 41 467 41
30 % 41 467 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 295 33
95 % 34 296 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 34 296 46
70 % 34 296 58
50 % 40 448 36
40 % 40 454 47
30 % 40 454 63
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 255 50
95 % 34 294 50
90 % 34 294 54
70 % 34 294 65
50 % 34 294 94
40 % 34 294 116
30 % 34 294 131
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 285 44
95 % 34 285 54 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 34 285 59
70 % 34 285 71
50 % 34 285 100
40 % 34 285 121
30 % 34 285 135
Entity #22 | Chains: X
5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 248 51
95 % 32 248 65 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 32 248 69
70 % 32 248 87
50 % 33 323 87
40 % 33 323 105
30 % 33 323 120
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 296 32
95 % 34 296 40 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 34 296 45
70 % 34 296 57
50 % 40 458 29
40 % 40 464 42
30 % 40 464 59
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 295 36
95 % 34 295 45 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 34 295 49
70 % 34 295 61
50 % 40 459 31
40 % 40 459 44
30 % 40 461 60
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 300 28
95 % 41 306 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 41 306 39
70 % 41 306 50
50 % 41 306 90
40 % 41 306 111
30 % 48 395 86
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 300 29
95 % 35 300 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 35 300 42
70 % 35 300 52
50 % 41 397 54
40 % 41 403 67
30 % 41 403 81
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 295 35
95 % 35 295 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 35 299 43
70 % 35 299 53
50 % 42 463 27
40 % 46 598 18
30 % 46 598 31
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 96 229
95 % 34 295 47 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 34 295 51
70 % 34 295 63
50 % 40 452 34
40 % 40 453 48
30 % 42 582 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures