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An Information Portal to 106858 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQE
Sequence Clusters for the Sequence Entities in PDB 2VQE
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 194 28
95% 16 195 46
90% 16 195 48
70% 16 195 59
50% 22 276 35
40% 22 276 45
30% 24 326 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 196 26
95% 16 196 42
90% 16 196 44
70% 16 196 55
50% 16 270 42
40% 20 325 36
30% 20 325 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 165 35
95% 16 203 31
90% 16 203 33
70% 16 282 24
50% 16 282 34
40% 16 282 44
30% 16 282 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 197 23
95% 16 197 38
90% 16 197 40
70% 16 197 52
50% 16 275 39
40% 16 275 51
30% 18 326 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 195 27
95% 16 195 47
90% 16 195 49
70% 16 195 60
50% 16 195 92
40% 16 195 116
30% 16 195 139
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 199 19
95% 17 204 30
90% 17 204 32
70% 17 204 44
50% 20 283 33
40% 20 283 43
30% 20 283 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 191 29
95% 16 196 44
90% 16 196 46
70% 16 196 57
50% 16 196 89
40% 16 196 114
30% 16 273 77
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 80 221
95% 16 190 49
90% 16 194 50
70% 16 194 61
50% 16 194 93
40% 16 194 117
30% 16 194 141
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 496
95% 16 172 70
90% 16 172 74
70% 16 172 88
50% 16 172 125
40% 16 172 146
30% 16 172 165
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 174 47
95% 17 174 69
90% 17 174 73
70% 17 174 87
50% 17 273 38
40% 17 273 49
30% 17 273 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 196 24
95% 16 197 35
90% 16 197 38
70% 16 197 50
50% 16 197 88
40% 16 270 53
30% 16 270 76
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 354
95% 16 195 45
90% 16 195 47
70% 16 195 58
50% 16 195 91
40% 16 195 115
30% 16 195 138
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 186 32
95% 16 186 51
90% 16 186 54
70% 16 186 66
50% 16 186 110
40% 16 186 133
30% 16 186 151
Entity #22: Chains: X - 5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 171 48
95% 16 171 72
90% 16 171 76
70% 16 171 90
50% 16 210 76
40% 16 210 101
30% 16 210 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 189 30
95% 16 197 36
90% 16 197 39
70% 16 197 51
50% 16 270 40
40% 16 271 52
30% 16 271 75
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 196 25
95% 16 196 40
90% 16 196 42
70% 16 196 54
50% 16 274 37
40% 16 274 48
30% 16 276 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 201 17
95% 23 207 29
90% 23 207 31
70% 23 207 42
50% 23 207 81
40% 23 207 108
30% 25 244 90
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 200 18
95% 17 201 33
90% 17 201 35
70% 17 201 46
50% 18 242 55
40% 18 243 71
30% 18 243 95
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 196 22
95% 17 196 37
90% 17 200 36
70% 17 200 47
50% 18 276 36
40% 19 278 46
30% 22 330 45
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 90 140
95% 16 196 43
90% 16 196 45
70% 16 196 56
50% 16 270 41
40% 16 270 54
30% 18 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.