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An Information Portal to 107620 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQE
Sequence Clusters for the Sequence Entities in PDB 2VQE
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 196 28
95% 18 197 44
90% 18 197 46
70% 18 197 58
50% 25 280 35
40% 25 280 45
30% 27 331 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 198 24
95% 18 198 40
90% 18 198 42
70% 18 198 54
50% 19 274 42
40% 23 330 35
30% 23 330 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 165 35
95% 18 205 31
90% 18 205 33
70% 19 286 24
50% 19 286 34
40% 19 286 44
30% 19 286 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 199 21
95% 18 199 37
90% 18 199 39
70% 18 199 51
50% 19 279 39
40% 19 279 51
30% 21 331 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 197 25
95% 18 197 45
90% 18 197 47
70% 18 197 59
50% 18 197 92
40% 18 197 114
30% 18 197 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 201 19
95% 19 206 30
90% 19 206 32
70% 19 206 43
50% 23 287 33
40% 23 287 43
30% 23 287 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 193 29
95% 18 198 42
90% 18 198 44
70% 18 198 56
50% 18 198 90
40% 18 198 112
30% 19 277 75
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 80 222
95% 18 192 49
90% 18 196 48
70% 18 196 60
50% 18 196 93
40% 18 196 116
30% 18 196 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 505
95% 18 174 71
90% 18 174 75
70% 18 174 88
50% 18 174 128
40% 18 174 146
30% 18 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 176 45
95% 19 176 67
90% 19 176 70
70% 19 176 83
50% 20 277 38
40% 20 277 48
30% 20 277 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 198 22
95% 18 199 34
90% 18 199 37
70% 18 199 48
50% 18 199 88
40% 19 274 53
30% 19 274 74
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 355
95% 18 197 43
90% 18 197 45
70% 18 197 57
50% 18 197 91
40% 18 197 113
30% 18 197 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 188 31
95% 18 188 51
90% 18 188 54
70% 18 188 66
50% 18 188 111
40% 18 188 133
30% 18 188 153
Entity #22: Chains: X - 5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 173 48
95% 18 173 72
90% 18 173 76
70% 18 173 90
50% 18 213 75
40% 18 213 102
30% 18 213 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 191 30
95% 18 199 35
90% 18 199 38
70% 18 199 49
50% 19 274 40
40% 19 275 52
30% 19 275 73
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 198 23
95% 18 198 39
90% 18 198 41
70% 18 198 53
50% 19 278 37
40% 19 278 47
30% 19 280 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 203 17
95% 25 209 29
90% 25 209 31
70% 25 209 42
50% 25 209 80
40% 25 209 106
30% 28 247 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 202 18
95% 19 203 32
90% 19 203 34
70% 19 203 45
50% 21 245 53
40% 21 246 70
30% 21 246 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 198 20
95% 19 198 36
90% 19 202 35
70% 19 202 46
50% 21 280 36
40% 22 282 46
30% 25 335 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 90 156
95% 18 198 41
90% 18 198 43
70% 18 198 55
50% 19 274 41
40% 19 274 54
30% 21 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.