Sequence Similarity Clusters for the Entities in PDB 2VQE

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 267 40
95 % 28 268 54
90 % 28 268 58
70 % 28 268 69
50 % 40 402 26
40 % 40 402 37
30 % 42 502 32
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 37
95 % 28 269 50
90 % 28 269 54
70 % 28 269 64
50 % 34 395 34
40 % 38 501 19
30 % 38 501 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 217 50
95 % 28 276 40
90 % 28 276 44
70 % 34 406 22
50 % 34 412 25
40 % 34 412 35
30 % 34 412 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 270 35
95 % 28 270 47
90 % 28 270 52
70 % 28 270 62
50 % 34 400 33
40 % 34 400 45
30 % 36 502 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 268 38
95 % 28 268 55
90 % 28 268 59
70 % 28 271 61
50 % 28 271 90
40 % 28 271 111
30 % 28 271 124
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 272 30
95 % 29 277 39
90 % 29 277 43
70 % 29 277 55
50 % 38 408 27
40 % 38 411 36
30 % 38 411 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 264 41
95 % 28 269 52
90 % 28 269 56
70 % 28 269 66
50 % 28 272 89
40 % 28 272 110
30 % 34 396 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 247
95 % 28 263 57
90 % 28 267 60
70 % 28 267 70
50 % 28 267 94
40 % 28 267 115
30 % 28 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 692
95 % 26 234 65
90 % 26 234 70
70 % 26 234 81
50 % 26 234 108
40 % 26 234 133
30 % 26 234 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 272 29
95 % 29 272 43
90 % 29 272 48
70 % 29 272 58
50 % 35 400 30
40 % 35 403 41
30 % 35 403 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 33
95 % 28 270 44
90 % 28 270 50
70 % 28 270 59
50 % 34 392 37
40 % 34 395 46
30 % 34 395 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 491
95 % 28 268 53
90 % 28 268 57
70 % 28 268 68
50 % 28 268 93
40 % 28 268 114
30 % 28 268 126
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 259 43
95 % 28 259 59
90 % 28 259 63
70 % 28 259 75
50 % 28 259 98
40 % 28 259 120
30 % 28 259 131
Entity #22 | Chains: X
5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 233 48
95 % 26 233 66
90 % 26 233 71
70 % 26 233 82
50 % 27 306 83
40 % 27 306 102
30 % 27 306 114
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 262 42
95 % 28 270 45
90 % 28 270 51
70 % 28 270 60
50 % 34 396 32
40 % 34 399 43
30 % 34 399 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 36
95 % 28 269 49
90 % 28 269 53
70 % 28 269 63
50 % 34 400 31
40 % 34 400 44
30 % 34 402 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 274 27
95 % 35 280 37
90 % 35 280 41
70 % 35 280 52
50 % 35 280 87
40 % 35 280 106
30 % 42 336 93
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 273 28
95 % 29 274 41
90 % 29 274 45
70 % 29 274 56
50 % 35 339 71
40 % 35 342 84
30 % 35 342 97
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 269 34
95 % 29 269 46
90 % 29 273 46
70 % 29 273 57
50 % 36 401 28
40 % 37 405 38
30 % 40 514 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 91 212
95 % 28 269 51
90 % 28 269 55
70 % 28 269 65
50 % 34 395 35
40 % 34 395 47
30 % 36 501 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.