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An Information Portal to 108263 Biological Macromolecular Structures

MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
Sequence Clustering and Redundancy Reduction Results
2VQE
Sequence Clusters for the Sequence Entities in PDB 2VQE
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 197 29
95% 18 198 45
90% 18 198 47
70% 18 198 59
50% 25 282 35
40% 25 282 45
30% 27 333 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 199 25
95% 18 199 40
90% 18 199 42
70% 18 199 54
50% 19 276 42
40% 23 333 35
30% 23 333 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 166 36
95% 18 206 31
90% 18 206 33
70% 19 288 24
50% 19 288 34
40% 19 288 44
30% 19 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 200 22
95% 18 200 38
90% 18 200 40
70% 18 200 51
50% 19 281 39
40% 19 281 50
30% 21 334 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 198 26
95% 18 198 46
90% 18 198 48
70% 18 198 60
50% 18 198 92
40% 18 198 114
30% 18 198 138
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 202 20
95% 19 207 30
90% 19 207 32
70% 19 207 43
50% 23 289 33
40% 23 289 43
30% 23 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 194 30
95% 18 199 42
90% 18 199 44
70% 18 199 56
50% 18 199 89
40% 18 199 112
30% 19 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 80 222
95% 18 193 50
90% 18 197 49
70% 18 197 61
50% 18 197 93
40% 18 197 116
30% 18 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 508
95% 18 174 71
90% 18 174 75
70% 18 174 89
50% 18 174 130
40% 18 174 148
30% 18 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 202 19
95% 19 202 33
90% 19 202 36
70% 19 202 47
50% 20 279 38
40% 20 279 49
30% 20 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 199 23
95% 18 200 35
90% 18 200 38
70% 18 200 48
50% 18 200 88
40% 19 276 53
30% 19 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 49 358
95% 18 198 44
90% 18 198 46
70% 18 198 58
50% 18 198 91
40% 18 198 113
30% 18 198 137
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 189 32
95% 18 189 52
90% 18 189 55
70% 18 189 67
50% 18 189 112
40% 18 189 135
30% 18 189 153
Entity #22: Chains: X - 5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 173 48
95% 18 173 72
90% 18 173 76
70% 18 173 91
50% 18 214 76
40% 18 214 102
30% 18 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 192 31
95% 18 200 36
90% 18 200 39
70% 18 200 49
50% 19 276 40
40% 19 277 51
30% 19 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 199 24
95% 18 199 39
90% 18 199 41
70% 18 199 52
50% 19 280 37
40% 19 280 48
30% 19 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 204 17
95% 25 210 29
90% 25 210 31
70% 25 210 42
50% 25 210 82
40% 25 210 107
30% 28 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 203 18
95% 19 204 32
90% 19 204 34
70% 19 204 44
50% 21 246 54
40% 21 247 71
30% 21 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 199 21
95% 19 199 37
90% 19 203 35
70% 19 203 45
50% 21 282 36
40% 22 284 46
30% 25 338 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 90 158
95% 18 199 41
90% 18 199 43
70% 18 199 55
50% 19 276 41
40% 19 276 54
30% 21 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.