Sequence Similarity Clusters for the Entities in PDB 2VQE

Entity #1 | Chains: A
16S RRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 267 37
95 % 28 268 51
90 % 28 268 54
70 % 28 268 65
50 % 40 395 25
40 % 40 395 37
30 % 42 494 30
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 35
95 % 28 269 47
90 % 28 269 50
70 % 28 269 60
50 % 34 389 34
40 % 38 491 18
30 % 38 491 31
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 217 48
95 % 28 276 36
90 % 28 276 40
70 % 34 402 20
50 % 34 407 23
40 % 34 407 33
30 % 34 407 54
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 270 33
95 % 28 270 44
90 % 28 270 48
70 % 28 270 57
50 % 34 394 31
40 % 34 394 43
30 % 36 495 33
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 268 36
95 % 28 268 52
90 % 28 268 55
70 % 28 270 58
50 % 28 270 87
40 % 28 270 108
30 % 28 270 120
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 272 29
95 % 29 277 35
90 % 29 277 39
70 % 29 277 50
50 % 38 402 24
40 % 38 405 34
30 % 38 405 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 264 38
95 % 28 269 49
90 % 28 269 52
70 % 28 269 62
50 % 28 271 86
40 % 28 271 106
30 % 34 390 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 87 235
95 % 28 263 53
90 % 28 267 56
70 % 28 267 66
50 % 28 267 90
40 % 28 267 111
30 % 28 267 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 666
95 % 26 234 62
90 % 26 234 66
70 % 26 234 77
50 % 26 234 103
40 % 26 234 129
30 % 26 234 140
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 272 28
95 % 29 272 40
90 % 29 272 45
70 % 29 272 54
50 % 35 394 28
40 % 35 397 39
30 % 35 397 56
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 31
95 % 28 270 41
90 % 28 270 46
70 % 28 270 55
50 % 34 388 33
40 % 34 391 42
30 % 34 391 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 51 465
95 % 28 268 50
90 % 28 268 53
70 % 28 268 64
50 % 28 268 89
40 % 28 268 110
30 % 28 268 122
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 259 42
95 % 28 259 56
90 % 28 259 60
70 % 28 259 69
50 % 28 259 94
40 % 28 259 116
30 % 28 259 129
Entity #22 | Chains: X
5'-R(*UP*UP*AP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
5'-R(*GP*CP*AP*UP*GP*CP*UP*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*CP)-3' rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 233 45
95 % 26 233 63
90 % 26 233 67
70 % 26 233 78
50 % 27 302 80
40 % 27 302 97
30 % 27 302 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 262 39
95 % 28 270 42
90 % 28 270 47
70 % 28 270 56
50 % 34 390 30
40 % 34 393 40
30 % 34 393 59
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 269 34
95 % 28 269 46
90 % 28 269 49
70 % 28 269 59
50 % 34 394 29
40 % 34 394 41
30 % 34 396 58
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 274 26
95 % 35 280 33
90 % 35 280 38
70 % 35 280 49
50 % 35 280 84
40 % 35 280 103
30 % 42 334 88
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 273 27
95 % 29 274 38
90 % 29 274 42
70 % 29 274 52
50 % 35 336 65
40 % 35 339 76
30 % 35 339 91
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 269 32
95 % 29 269 43
90 % 29 273 43
70 % 29 273 53
50 % 36 395 26
40 % 37 399 35
30 % 40 504 28
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 91 204
95 % 28 269 48
90 % 28 269 51
70 % 28 269 61
50 % 34 389 35
40 % 34 389 45
30 % 36 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.