Sequence Similarity Clusters for the Entities in PDB 2VKM

Entity #1 | Chains: A,B,C,D
BETA-SECRETASE 1 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 278 20
95 % 207 361 14 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 207 361 15
70 % 207 361 24
50 % 212 373 38
40 % 212 373 50
30 % 212 373 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.