Sequence Similarity Clusters for the Entities in PDB 2VKM

Entity #1 | Chains: A,B,C,D
BETA-SECRETASE 1 protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 278 21
95 % 207 361 15 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 207 361 16
70 % 207 361 24
50 % 212 373 40
40 % 212 373 51
30 % 212 373 71

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures