Sequence Similarity Clusters for the Entities in PDB 2V4H

Entity #1 | Chains: A,B
NF-KAPPA-B ESSENTIAL MODULATOR protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46741
95 % 1 1 35007 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 2 2 19844
70 % 2 2 18240
50 % 2 2 15832
40 % 2 2 14106
30 % 2 2 12069
Entity #2 | Chains: C,D
1D5 DARPIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45175
95 % 1 1 33958
90 % 2 2 19373
70 % 71 80 274
50 % 85 95 213
40 % 103 124 190
30 % 189 226 64

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures