Sequence Similarity Clusters for the Entities in PDB 2V4H

Entity #1 | Chains: A,B
NF-KAPPA-B ESSENTIAL MODULATOR protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46240
95 % 1 1 32451 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 2 2 21412
70 % 2 2 19576
50 % 2 2 16904
40 % 2 2 14943
30 % 2 2 12509
Entity #2 | Chains: C,D
1D5 DARPIN protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39478
95 % 1 1 33328
90 % 2 2 17724
70 % 74 86 259
50 % 102 118 190
40 % 122 150 170
30 % 265 327 41

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures