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Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet (Part 3 of 4). This file contains the 30S subunit, mRNA, P-site ASL, E-site tRNA and RRF for Molecule 2.
Sequence Clustering and Redundancy Reduction Results
2V48
Sequence Clusters for the Sequence Entities in PDB 2V48
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 252 29
95% 205 254 48
90% 205 254 51
70% 205 254 63
50% 263 369 34
40% 263 369 48
30% 263 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 255 27
95% 205 255 44
90% 205 255 47
70% 205 255 59
50% 257 363 42
40% 267 403 39
30% 267 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 224 37
95% 205 262 36
90% 205 262 38
70% 257 375 24
50% 257 375 33
40% 257 375 47
30% 257 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 256 24
95% 205 256 42
90% 205 256 45
70% 205 256 57
50% 257 365 39
40% 257 365 53
30% 265 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 254 28
95% 205 254 49
90% 205 254 52
70% 205 254 64
50% 205 254 99
40% 205 254 124
30% 205 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 258 21
95% 209 263 35
90% 209 263 37
70% 209 263 48
50% 264 376 32
40% 264 376 45
30% 264 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 250 30
95% 205 255 46
90% 205 255 49
70% 205 255 61
50% 205 255 97
40% 205 255 122
30% 257 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 157 62
95% 203 249 51
90% 205 253 53
70% 205 253 65
50% 205 253 100
40% 205 253 126
30% 205 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 172 49
95% 187 221 64
90% 187 221 68
70% 187 221 81
50% 187 221 116
40% 187 221 144
30% 187 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 187 223 38
95% 187 223 63
90% 187 223 67
70% 187 223 80
50% 258 366 38
40% 258 366 52
30% 258 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 255 25
95% 205 256 39
90% 205 256 43
70% 205 256 55
50% 205 256 96
40% 257 363 55
30% 257 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 193 43
95% 205 254 47
90% 205 254 50
70% 205 254 62
50% 205 254 98
40% 205 254 123
30% 205 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 238 34
95% 203 238 55
90% 203 238 59
70% 203 238 71
50% 203 238 110
40% 203 238 133
30% 203 238 153
Entity #22: Chains: V - P-SITE RNA ASL-PHE rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - TRNA-FMET rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - MRNA rna, length: 31 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Y - RIBOSOME RECYCLING FACTOR protein, length: 185 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 11 4033
95% 5 11 4623
90% 5 11 4651
70% 5 11 4590
50% 10 19 2404
40% 19 30 1463
30% 19 30 1415
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 219 39
95% 186 219 66
90% 186 219 70
70% 186 219 83
50% 214 282 81
40% 214 282 101
30% 214 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 248 32
95% 205 256 40
90% 205 256 44
70% 205 256 56
50% 257 363 40
40% 257 364 54
30% 257 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 255 26
95% 205 255 43
90% 205 255 46
70% 205 255 58
50% 258 367 37
40% 258 367 51
30% 258 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 207 260 18
95% 213 266 34
90% 213 266 36
70% 213 266 47
50% 213 266 88
40% 213 266 112
30% 239 313 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 206 259 20
95% 206 260 37
90% 206 260 39
70% 206 260 51
50% 233 308 57
40% 233 309 73
30% 233 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 255 23
95% 204 255 41
90% 206 259 40
70% 206 259 52
50% 260 369 36
40% 261 371 49
30% 270 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 113 133
95% 205 255 45
90% 205 255 48
70% 205 255 60
50% 257 363 41
40% 257 363 56
30% 265 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.