Sequence Similarity Clusters for the Entities in PDB 2V2T

Entity #1 | Chains: A
TRANSCRIPTION FACTOR RELB protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33943
95 % 2 2 29157 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 2 27996
70 % 2 2 25215
50 % 12 14 2426
40 % 21 26 1293
30 % 21 26 1288
Entity #2 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3779
95 % 8 10 3901 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 8 10 3966
70 % 8 10 3886
50 % 10 12 3164
40 % 22 26 1293
30 % 22 26 1288
Entity #3 | Chains: C,D
5'-D(*CP*GP*GP*GP*AP*AP*TP*TP*CP*CP*CP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures