Sequence Similarity Clusters for the Entities in PDB 2V2T

Entity #1 | Chains: A
TRANSCRIPTION FACTOR RELB protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38021
95 % 2 2 29731 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 2 28679
70 % 2 2 25857
50 % 12 14 2402
40 % 21 26 1292
30 % 21 26 1262
Entity #2 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3404
95 % 8 10 3851 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 8 10 3915
70 % 8 10 3860
50 % 10 12 3144
40 % 22 26 1292
30 % 22 26 1262
Entity #3 | Chains: C,D
5'-D(*CP*GP*GP*GP*AP*AP*TP*TP*CP*CP*CP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures