Sequence Similarity Clusters for the Entities in PDB 2V2T

Entity #1 | Chains: A
TRANSCRIPTION FACTOR RELB protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36765
95 % 2 2 28799 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 2 2 27804
70 % 2 2 25114
50 % 12 14 2280
40 % 21 26 1249
30 % 21 26 1222
Entity #2 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3268
95 % 8 10 3711 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 8 10 3769
70 % 8 10 3713
50 % 10 12 3037
40 % 22 26 1249
30 % 22 26 1222
Entity #3 | Chains: C,D
5'-D(*CP*GP*GP*GP*AP*AP*TP*TP*CP*CP*CP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.