POP-OUT | CLOSE
 
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXD
Sequence Clusters for the Sequence Entities in PDB 2UXD
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1523 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 265 27
95% 164 267 47
90% 164 267 49
70% 164 267 59
50% 209 382 34
40% 209 382 45
30% 209 387 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 268 25
95% 164 268 43
90% 164 268 45
70% 164 268 55
50% 203 376 41
40% 241 450 35
30% 241 450 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 237 35
95% 164 275 35
90% 164 275 37
70% 203 388 24
50% 203 388 33
40% 203 388 44
30% 203 388 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 269 22
95% 164 269 41
90% 164 269 43
70% 164 269 53
50% 203 378 38
40% 203 378 51
30% 239 448 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 267 26
95% 164 267 48
90% 164 267 50
70% 164 267 60
50% 164 267 93
40% 164 267 119
30% 164 267 140
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 271 20
95% 168 276 32
90% 168 276 34
70% 168 276 47
50% 210 389 32
40% 210 389 43
30% 210 389 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 263 28
95% 164 268 45
90% 164 268 47
70% 164 268 57
50% 164 268 91
40% 164 268 117
30% 203 376 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 92 221
95% 163 262 49
90% 164 266 51
70% 164 266 61
50% 164 266 94
40% 164 266 120
30% 164 266 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 183 47
95% 156 232 61
90% 156 232 64
70% 156 232 78
50% 156 232 115
40% 156 232 139
30% 156 232 160
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 234 37
95% 156 234 59
90% 156 234 63
70% 156 234 77
50% 204 379 37
40% 204 379 49
30% 204 379 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 268 23
95% 164 269 38
90% 164 269 41
70% 164 269 51
50% 164 269 90
40% 203 376 53
30% 203 376 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 61 362
95% 164 267 46
90% 164 267 48
70% 164 267 58
50% 164 267 92
40% 164 267 118
30% 164 267 139
Entity #21: Chains: V - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 249 33
95% 164 249 52
90% 164 249 55
70% 164 249 67
50% 164 249 104
40% 164 249 130
30% 164 249 150
Entity #22: Chains: X - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 230 38
95% 155 230 62
90% 155 230 65
70% 155 230 79
50% 170 293 73
40% 170 293 98
30% 170 293 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 261 29
95% 164 269 39
90% 164 269 42
70% 164 269 52
50% 203 376 39
40% 203 377 52
30% 203 377 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 268 24
95% 164 268 42
90% 164 268 44
70% 164 268 54
50% 204 380 36
40% 204 380 48
30% 204 382 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 273 18
95% 172 279 29
90% 172 279 30
70% 172 279 44
50% 172 279 83
40% 172 279 106
30% 198 326 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 272 19
95% 165 273 36
90% 165 273 38
70% 165 273 49
50% 191 321 56
40% 191 322 74
30% 191 322 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 268 21
95% 164 268 40
90% 165 272 39
70% 165 272 50
50% 206 382 35
40% 207 384 46
30% 244 455 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 113 139
95% 164 268 44
90% 164 268 46
70% 164 268 56
50% 203 376 40
40% 203 376 54
30% 239 446 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.