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Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXD
Sequence Clusters for the Sequence Entities in PDB 2UXD
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1523 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 197 29
95% 128 198 45
90% 128 198 47
70% 128 198 60
50% 154 283 35
40% 154 283 45
30% 172 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 26
95% 128 199 40
90% 128 199 42
70% 128 199 54
50% 148 277 41
40% 168 335 35
30% 168 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 166 36
95% 128 206 31
90% 128 206 33
70% 148 288 24
50% 148 289 34
40% 148 289 44
30% 148 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 200 23
95% 128 200 38
90% 128 200 40
70% 128 200 51
50% 151 282 39
40% 151 282 50
30% 169 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 198 27
95% 128 198 46
90% 128 198 48
70% 128 199 57
50% 128 199 90
40% 128 199 113
30% 128 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 202 21
95% 132 207 30
90% 132 207 32
70% 132 207 43
50% 155 290 33
40% 155 291 43
30% 155 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 194 30
95% 128 199 42
90% 128 199 44
70% 128 199 56
50% 128 199 89
40% 128 200 112
30% 151 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 80 222
95% 127 193 50
90% 128 197 49
70% 128 197 61
50% 128 197 93
40% 128 197 116
30% 128 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 125 59
95% 119 174 71
90% 119 174 75
70% 119 174 89
50% 119 174 130
40% 119 174 148
30% 119 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 202 20
95% 129 202 33
90% 129 202 36
70% 129 202 47
50% 149 280 38
40% 149 280 49
30% 149 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 24
95% 128 200 35
90% 128 200 38
70% 128 200 48
50% 148 276 43
40% 148 277 52
30% 148 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 49 358
95% 128 198 44
90% 128 198 46
70% 128 198 59
50% 128 198 92
40% 128 198 114
30% 128 198 138
Entity #21: Chains: V - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 189 32
95% 128 189 52
90% 128 189 55
70% 128 189 67
50% 128 189 112
40% 128 189 135
30% 128 189 153
Entity #22: Chains: X - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 173 48
95% 119 173 72
90% 119 173 76
70% 119 173 91
50% 124 214 77
40% 124 214 102
30% 124 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 192 31
95% 128 200 36
90% 128 200 39
70% 128 200 49
50% 148 277 40
40% 148 278 51
30% 148 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 25
95% 128 199 39
90% 128 199 41
70% 128 199 52
50% 149 281 37
40% 149 281 48
30% 149 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 204 18
95% 136 210 29
90% 136 210 31
70% 136 210 42
50% 136 210 83
40% 136 210 107
30% 153 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 203 19
95% 129 204 32
90% 129 204 34
70% 129 204 44
50% 149 247 55
40% 149 248 70
30% 149 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 22
95% 128 199 37
90% 129 203 35
70% 129 203 45
50% 151 283 36
40% 152 285 46
30% 171 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 90 159
95% 128 199 41
90% 128 199 43
70% 128 199 55
50% 148 277 42
40% 148 277 54
30% 166 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.