Sequence Similarity Clusters for the Entities in PDB 2UXD

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 254 36
95 % 173 255 49
90 % 173 255 54
70 % 173 255 64
50 % 207 362 28
40 % 207 362 38
30 % 228 436 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 256 34
95 % 173 256 45
90 % 173 256 50
70 % 173 256 59
50 % 201 356 35
40 % 224 438 20
30 % 224 439 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 208 46
95 % 173 263 36
90 % 173 263 41
70 % 201 367 22
50 % 201 368 27
40 % 201 368 37
30 % 201 368 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 257 32
95 % 173 257 43
90 % 173 257 48
70 % 173 257 57
50 % 204 361 32
40 % 204 361 43
30 % 225 437 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 255 35
95 % 173 255 50
90 % 173 255 55
70 % 173 256 62
50 % 173 256 88
40 % 173 256 108
30 % 173 256 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 259 29
95 % 177 264 35
90 % 177 264 40
70 % 177 264 50
50 % 208 369 26
40 % 208 370 36
30 % 208 370 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 251 37
95 % 173 256 47
90 % 173 256 52
70 % 173 256 61
50 % 173 256 87
40 % 173 257 107
30 % 204 359 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 87 225
95 % 172 250 51
90 % 173 254 56
70 % 173 254 66
50 % 173 254 90
40 % 173 254 111
30 % 173 254 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 170 57
95 % 156 221 64
90 % 156 221 69
70 % 156 221 79
50 % 156 221 111
40 % 156 221 132
30 % 156 221 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 259 27
95 % 174 259 38
90 % 174 259 44
70 % 174 259 53
50 % 202 359 31
40 % 202 359 41
30 % 202 359 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 256 30
95 % 173 257 39
90 % 173 257 45
70 % 173 257 54
50 % 201 355 34
40 % 201 356 44
30 % 201 356 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 51 384
95 % 173 255 48
90 % 173 255 53
70 % 173 255 63
50 % 173 255 89
40 % 173 255 110
30 % 173 255 122
Entity #21 | Chains: V
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 246 39
95 % 173 246 54
90 % 173 246 59
70 % 173 246 69
50 % 173 246 95
40 % 173 246 118
30 % 173 246 131
Entity #22 | Chains: X
ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 220 45
95 % 156 220 65
90 % 156 220 70
70 % 156 220 80
50 % 162 276 78
40 % 162 276 100
30 % 162 276 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 249 38
95 % 173 257 40
90 % 173 257 46
70 % 173 257 55
50 % 201 356 33
40 % 201 357 42
30 % 201 357 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 256 33
95 % 173 256 44
90 % 173 256 49
70 % 173 256 58
50 % 202 360 30
40 % 202 360 40
30 % 202 362 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 261 25
95 % 181 267 34
90 % 181 267 37
70 % 181 267 46
50 % 181 267 84
40 % 181 267 103
30 % 205 313 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 260 26
95 % 174 261 37
90 % 174 261 42
70 % 174 261 51
50 % 201 313 54
40 % 201 314 68
30 % 201 314 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 256 31
95 % 173 256 42
90 % 174 260 43
70 % 174 260 52
50 % 204 362 29
40 % 205 364 39
30 % 228 443 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 91 198
95 % 173 256 46
90 % 173 256 51
70 % 173 256 60
50 % 201 356 36
40 % 201 356 46
30 % 222 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.