Sequence Similarity Clusters for the Entities in PDB 2UXD

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 267 37
95 % 176 268 51
90 % 176 268 54
70 % 176 268 65
50 % 210 395 25
40 % 210 395 37
30 % 235 494 30
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 269 35
95 % 176 269 47
90 % 176 269 50
70 % 176 269 60
50 % 204 389 34
40 % 231 491 18
30 % 231 491 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 217 48
95 % 176 276 36
90 % 176 276 40
70 % 204 402 20
50 % 204 407 23
40 % 204 407 33
30 % 204 407 54
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 270 33
95 % 176 270 44
90 % 176 270 48
70 % 176 270 57
50 % 207 394 31
40 % 207 394 43
30 % 232 495 33
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 268 36
95 % 176 268 52
90 % 176 268 55
70 % 176 270 58
50 % 176 270 87
40 % 176 270 108
30 % 176 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 272 29
95 % 180 277 35
90 % 180 277 39
70 % 180 277 50
50 % 211 402 24
40 % 211 405 34
30 % 211 405 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 264 38
95 % 176 269 49
90 % 176 269 52
70 % 176 269 62
50 % 176 271 86
40 % 176 271 106
30 % 207 390 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 87 235
95 % 175 263 53
90 % 176 267 56
70 % 176 267 66
50 % 176 267 90
40 % 176 267 111
30 % 176 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 183 53
95 % 159 234 62
90 % 159 234 66
70 % 159 234 77
50 % 159 234 103
40 % 159 234 129
30 % 159 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 28
95 % 177 272 40
90 % 177 272 45
70 % 177 272 54
50 % 205 394 28
40 % 205 397 39
30 % 205 397 56
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 269 31
95 % 176 270 41
90 % 176 270 46
70 % 176 270 55
50 % 204 388 33
40 % 204 391 42
30 % 204 391 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 51 465
95 % 176 268 50
90 % 176 268 53
70 % 176 268 64
50 % 176 268 89
40 % 176 268 110
30 % 176 268 122
Entity #21 | Chains: V
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 259 42
95 % 176 259 56
90 % 176 259 60
70 % 176 259 69
50 % 176 259 94
40 % 176 259 116
30 % 176 259 129
Entity #22 | Chains: X
ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 233 45
95 % 159 233 63
90 % 159 233 67
70 % 159 233 78
50 % 165 302 80
40 % 165 302 97
30 % 165 302 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 262 39
95 % 176 270 42
90 % 176 270 47
70 % 176 270 56
50 % 204 390 30
40 % 204 393 40
30 % 204 393 59
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 269 34
95 % 176 269 46
90 % 176 269 49
70 % 176 269 59
50 % 205 394 29
40 % 205 394 41
30 % 205 396 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 274 26
95 % 184 280 33
90 % 184 280 38
70 % 184 280 49
50 % 184 280 84
40 % 184 280 103
30 % 208 334 88
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 273 27
95 % 177 274 38
90 % 177 274 42
70 % 177 274 52
50 % 204 336 65
40 % 204 339 76
30 % 204 339 91
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 269 32
95 % 176 269 43
90 % 177 273 43
70 % 177 273 53
50 % 207 395 26
40 % 208 399 35
30 % 235 504 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 91 204
95 % 176 269 48
90 % 176 269 51
70 % 176 269 61
50 % 204 389 35
40 % 204 389 45
30 % 229 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.