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An Information Portal to 105097 Biological Macromolecular Structures

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXD
Sequence Clusters for the Sequence Entities in PDB 2UXD
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1523 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 187 27
95% 120 188 47
90% 120 188 50
70% 120 188 60
50% 145 269 34
40% 145 269 46
30% 145 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 189 25
95% 120 189 43
90% 120 189 46
70% 120 189 56
50% 139 263 41
40% 159 316 35
30% 159 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 158 35
95% 120 196 35
90% 120 196 37
70% 139 275 24
50% 139 275 33
40% 139 275 45
30% 139 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 190 22
95% 120 190 41
90% 120 190 44
70% 120 190 54
50% 142 268 38
40% 142 268 51
30% 160 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 188 26
95% 120 188 48
90% 120 188 51
70% 120 188 61
50% 120 188 94
40% 120 188 119
30% 120 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 192 20
95% 124 197 33
90% 124 197 35
70% 124 197 47
50% 146 276 32
40% 146 276 43
30% 146 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 184 28
95% 120 189 45
90% 120 189 48
70% 120 189 58
50% 120 189 92
40% 120 189 117
30% 142 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 79 221
95% 119 183 49
90% 120 187 52
70% 120 187 62
50% 120 187 95
40% 120 187 120
30% 120 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 119 48
95% 113 168 61
90% 113 168 64
70% 113 168 80
50% 113 168 117
40% 113 168 139
30% 113 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 170 37
95% 113 170 59
90% 113 170 63
70% 113 170 78
50% 140 266 37
40% 140 266 49
30% 140 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 189 23
95% 120 190 38
90% 120 190 42
70% 120 190 52
50% 120 190 91
40% 139 263 53
30% 139 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 48 365
95% 120 188 46
90% 120 188 49
70% 120 188 59
50% 120 188 93
40% 120 188 118
30% 120 188 141
Entity #21: Chains: V - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 179 34
95% 120 179 53
90% 120 179 55
70% 120 179 68
50% 120 179 105
40% 120 179 132
30% 120 179 151
Entity #22: Chains: X - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 166 38
95% 112 166 63
90% 112 166 66
70% 112 166 82
50% 118 206 75
40% 118 206 100
30% 118 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 182 29
95% 120 190 39
90% 120 190 43
70% 120 190 53
50% 139 263 39
40% 139 264 52
30% 139 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 189 24
95% 120 189 42
90% 120 189 45
70% 120 189 55
50% 140 267 36
40% 140 267 48
30% 140 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 194 18
95% 128 200 29
90% 128 200 30
70% 128 200 44
50% 128 200 86
40% 128 200 108
30% 143 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 193 19
95% 121 194 36
90% 121 194 38
70% 121 194 49
50% 139 234 56
40% 139 235 74
30% 139 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 189 21
95% 120 189 40
90% 121 193 39
70% 121 193 51
50% 142 269 35
40% 143 271 47
30% 162 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 87 155
95% 120 189 44
90% 120 189 47
70% 120 189 57
50% 139 263 40
40% 139 263 54
30% 157 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.