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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXD
Sequence Clusters for the Sequence Entities in PDB 2UXD
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1523 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 193 28
95% 126 194 45
90% 126 194 47
70% 126 194 58
50% 151 275 34
40% 151 275 45
30% 151 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 195 26
95% 126 195 41
90% 126 195 43
70% 126 195 54
50% 145 269 41
40% 165 322 35
30% 165 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 164 35
95% 126 202 32
90% 126 202 33
70% 145 281 23
50% 145 281 33
40% 145 281 44
30% 145 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 196 23
95% 126 196 39
90% 126 196 41
70% 126 196 52
50% 148 274 38
40% 148 274 50
30% 166 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 194 27
95% 126 194 46
90% 126 194 48
70% 126 194 59
50% 126 194 92
40% 126 194 115
30% 126 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 198 21
95% 130 203 30
90% 130 203 31
70% 130 203 43
50% 152 282 32
40% 152 282 42
30% 152 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 190 29
95% 126 195 43
90% 126 195 45
70% 126 195 56
50% 126 195 89
40% 126 195 113
30% 148 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 79 223
95% 125 189 48
90% 126 193 50
70% 126 193 61
50% 126 193 95
40% 126 193 120
30% 126 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 123 47
95% 117 172 58
90% 117 172 62
70% 117 172 76
50% 117 172 111
40% 117 172 137
30% 117 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 174 36
95% 117 174 57
90% 117 174 61
70% 117 174 75
50% 146 272 37
40% 146 272 49
30% 146 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 195 24
95% 126 196 36
90% 126 196 39
70% 126 196 50
50% 126 196 87
40% 145 269 52
30% 145 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 48 363
95% 126 194 44
90% 126 194 46
70% 126 194 57
50% 126 194 91
40% 126 194 114
30% 126 194 136
Entity #21: Chains: V - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 185 32
95% 126 185 51
90% 126 185 54
70% 126 185 65
50% 126 185 101
40% 126 185 127
30% 126 185 147
Entity #22: Chains: X - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 171 37
95% 117 171 59
90% 117 171 63
70% 117 171 77
50% 122 210 73
40% 122 210 97
30% 122 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 188 30
95% 126 196 37
90% 126 196 40
70% 126 196 51
50% 145 269 39
40% 145 270 51
30% 145 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 195 25
95% 126 195 40
90% 126 195 42
70% 126 195 53
50% 146 273 36
40% 146 273 48
30% 146 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 200 17
95% 134 206 29
90% 134 206 30
70% 134 206 40
50% 134 206 80
40% 134 206 105
30% 150 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 199 20
95% 127 200 33
90% 127 200 34
70% 127 200 47
50% 146 241 54
40% 146 242 70
30% 146 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 195 22
95% 126 195 38
90% 127 199 35
70% 127 199 48
50% 148 275 35
40% 149 277 46
30% 168 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 89 144
95% 126 195 42
90% 126 195 44
70% 126 195 55
50% 145 269 40
40% 145 269 53
30% 163 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.