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An Information Portal to 106082 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Sequence Clustering and Redundancy Reduction Results
2UXC
Sequence Clusters for the Sequence Entities in PDB 2UXC
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 193 28
95% 34 194 45
90% 34 194 47
70% 34 194 58
50% 44 275 34
40% 44 275 45
30% 44 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 26
95% 34 195 41
90% 34 195 43
70% 34 195 54
50% 38 269 41
40% 45 322 35
30% 45 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 164 35
95% 34 202 32
90% 34 202 33
70% 38 281 23
50% 38 281 33
40% 38 281 44
30% 38 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 23
95% 34 196 39
90% 34 196 41
70% 34 196 52
50% 38 274 38
40% 38 274 50
30% 43 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 194 27
95% 34 194 46
90% 34 194 48
70% 34 194 59
50% 34 194 92
40% 34 194 115
30% 34 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 198 21
95% 36 203 30
90% 36 203 31
70% 36 203 43
50% 43 282 32
40% 43 282 42
30% 43 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 190 29
95% 34 195 43
90% 34 195 45
70% 34 195 56
50% 34 195 89
40% 34 195 113
30% 38 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 79 223
95% 34 189 48
90% 34 193 50
70% 34 193 61
50% 34 193 95
40% 34 193 120
30% 34 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 123 47
95% 31 172 58
90% 31 172 62
70% 31 172 76
50% 31 172 111
40% 31 172 137
30% 31 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 174 36
95% 32 174 57
90% 32 174 61
70% 32 174 75
50% 39 272 37
40% 39 272 49
30% 39 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 24
95% 34 196 36
90% 34 196 39
70% 34 196 50
50% 34 196 87
40% 38 269 52
30% 38 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 48 363
95% 34 194 44
90% 34 194 46
70% 34 194 57
50% 34 194 91
40% 34 194 114
30% 34 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 185 32
95% 34 185 51
90% 34 185 54
70% 34 185 65
50% 34 185 101
40% 34 185 127
30% 34 185 147
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 171 37
95% 31 171 59
90% 31 171 63
70% 31 171 77
50% 32 210 73
40% 32 210 97
30% 32 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 188 30
95% 34 196 37
90% 34 196 40
70% 34 196 51
50% 38 269 39
40% 38 270 51
30% 38 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 25
95% 34 195 40
90% 34 195 42
70% 34 195 53
50% 39 273 36
40% 39 273 48
30% 39 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 17
95% 41 206 29
90% 41 206 30
70% 41 206 40
50% 41 206 80
40% 41 206 105
30% 46 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 20
95% 35 200 33
90% 35 200 34
70% 35 200 47
50% 39 241 54
40% 39 242 70
30% 39 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 195 22
95% 35 195 38
90% 35 199 35
70% 35 199 48
50% 41 275 35
40% 42 277 46
30% 48 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 89 144
95% 34 195 42
90% 34 195 44
70% 34 195 55
50% 38 269 40
40% 38 269 53
30% 43 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.