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CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Sequence Clustering and Redundancy Reduction Results
2UXC
Sequence Clusters for the Sequence Entities in PDB 2UXC
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 265 27
95% 38 267 47
90% 38 267 49
70% 38 267 59
50% 54 382 34
40% 54 382 45
30% 54 387 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 268 25
95% 38 268 43
90% 38 268 45
70% 38 268 55
50% 48 376 41
40% 60 436 38
30% 60 436 51
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 237 35
95% 38 275 35
90% 38 275 37
70% 48 388 24
50% 48 388 33
40% 48 388 44
30% 48 388 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 269 22
95% 38 269 41
90% 38 269 43
70% 38 269 53
50% 48 378 38
40% 48 378 51
30% 58 434 54
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 267 26
95% 38 267 48
90% 38 267 50
70% 38 267 60
50% 38 267 93
40% 38 267 119
30% 38 267 140
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 271 20
95% 40 276 32
90% 40 276 34
70% 40 276 47
50% 53 389 32
40% 53 389 43
30% 53 389 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 263 28
95% 38 268 45
90% 38 268 47
70% 38 268 57
50% 38 268 91
40% 38 268 117
30% 48 376 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 92 220
95% 38 262 49
90% 38 266 51
70% 38 266 61
50% 38 266 94
40% 38 266 120
30% 38 266 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 183 47
95% 35 232 61
90% 35 232 64
70% 35 232 78
50% 35 232 113
40% 35 232 138
30% 35 232 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 234 37
95% 36 234 59
90% 36 234 63
70% 36 234 77
50% 49 379 37
40% 49 379 49
30% 49 379 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 268 23
95% 38 269 38
90% 38 269 41
70% 38 269 51
50% 38 269 90
40% 48 376 53
30% 48 376 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 61 362
95% 38 267 46
90% 38 267 48
70% 38 267 58
50% 38 267 92
40% 38 267 118
30% 38 267 139
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 249 33
95% 38 249 52
90% 38 249 55
70% 38 249 66
50% 38 249 103
40% 38 249 130
30% 38 249 150
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 230 38
95% 35 230 62
90% 35 230 65
70% 35 230 79
50% 39 293 73
40% 39 293 98
30% 39 293 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 261 29
95% 38 269 39
90% 38 269 42
70% 38 269 52
50% 48 376 39
40% 48 377 52
30% 48 377 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 268 24
95% 38 268 42
90% 38 268 44
70% 38 268 54
50% 49 380 36
40% 49 380 48
30% 49 382 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 273 18
95% 45 279 29
90% 45 279 30
70% 45 279 44
50% 45 279 82
40% 45 279 106
30% 53 326 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 272 19
95% 39 273 36
90% 39 273 38
70% 39 273 49
50% 46 321 56
40% 46 322 73
30% 46 322 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 268 21
95% 39 268 40
90% 39 272 39
70% 39 272 50
50% 51 382 35
40% 52 384 46
30% 63 441 47
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 113 138
95% 38 268 44
90% 38 268 46
70% 38 268 56
50% 48 376 40
40% 48 376 54
30% 58 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.