POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Sequence Clustering and Redundancy Reduction Results
2UXC
Sequence Clusters for the Sequence Entities in PDB 2UXC
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 187 27
95% 30 188 47
90% 30 188 50
70% 30 188 60
50% 40 269 34
40% 40 269 46
30% 40 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 25
95% 30 189 43
90% 30 189 46
70% 30 189 56
50% 34 263 41
40% 41 316 35
30% 41 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 158 35
95% 30 196 35
90% 30 196 37
70% 34 275 24
50% 34 275 33
40% 34 275 45
30% 34 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 190 22
95% 30 190 41
90% 30 190 44
70% 30 190 54
50% 34 268 38
40% 34 268 51
30% 39 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 188 26
95% 30 188 48
90% 30 188 51
70% 30 188 61
50% 30 188 94
40% 30 188 119
30% 30 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 192 20
95% 32 197 33
90% 32 197 35
70% 32 197 47
50% 39 276 32
40% 39 276 43
30% 39 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 184 28
95% 30 189 45
90% 30 189 48
70% 30 189 58
50% 30 189 92
40% 30 189 117
30% 34 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 79 221
95% 30 183 49
90% 30 187 52
70% 30 187 62
50% 30 187 95
40% 30 187 120
30% 30 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 119 48
95% 27 168 61
90% 27 168 64
70% 27 168 80
50% 27 168 117
40% 27 168 139
30% 27 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 170 37
95% 28 170 59
90% 28 170 63
70% 28 170 78
50% 35 266 37
40% 35 266 49
30% 35 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 23
95% 30 190 38
90% 30 190 42
70% 30 190 52
50% 30 190 91
40% 34 263 53
30% 34 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 48 365
95% 30 188 46
90% 30 188 49
70% 30 188 59
50% 30 188 93
40% 30 188 118
30% 30 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 179 34
95% 30 179 53
90% 30 179 55
70% 30 179 68
50% 30 179 105
40% 30 179 132
30% 30 179 151
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 166 38
95% 27 166 63
90% 27 166 66
70% 27 166 82
50% 28 206 75
40% 28 206 100
30% 28 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 182 29
95% 30 190 39
90% 30 190 43
70% 30 190 53
50% 34 263 39
40% 34 264 52
30% 34 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 24
95% 30 189 42
90% 30 189 45
70% 30 189 55
50% 35 267 36
40% 35 267 48
30% 35 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 194 18
95% 37 200 29
90% 37 200 30
70% 37 200 44
50% 37 200 86
40% 37 200 108
30% 42 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 193 19
95% 31 194 36
90% 31 194 38
70% 31 194 49
50% 35 234 56
40% 35 235 74
30% 35 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 189 21
95% 31 189 40
90% 31 193 39
70% 31 193 51
50% 37 269 35
40% 38 271 47
30% 44 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 87 155
95% 30 189 44
90% 30 189 47
70% 30 189 57
50% 34 263 40
40% 34 263 54
30% 39 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.