Sequence Similarity Clusters for the Entities in PDB 2UXC

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 253 35
95 % 57 254 48
90 % 57 254 53
70 % 57 254 63
50 % 72 356 28
40 % 72 356 38
30 % 77 429 35
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 33
95 % 57 255 43
90 % 57 255 48
70 % 57 255 57
50 % 66 350 35
40 % 73 430 21
30 % 73 431 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 207 46
95 % 57 262 35
90 % 57 262 40
70 % 66 361 23
50 % 66 362 27
40 % 66 362 37
30 % 66 362 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 256 31
95 % 57 256 41
90 % 57 256 46
70 % 57 256 55
50 % 66 355 32
40 % 66 355 43
30 % 71 430 38
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 254 34
95 % 57 254 49
90 % 57 254 54
70 % 57 255 60
50 % 57 255 86
40 % 57 255 107
30 % 57 255 119
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 27
95 % 59 263 34
90 % 59 263 39
70 % 59 263 48
50 % 71 363 26
40 % 71 364 36
30 % 71 364 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 250 36
95 % 57 255 45
90 % 57 255 50
70 % 57 255 59
50 % 57 255 85
40 % 57 256 106
30 % 66 353 61
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 87 224
95 % 57 249 51
90 % 57 253 55
70 % 57 253 64
50 % 57 253 88
40 % 57 253 109
30 % 57 253 122
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 169 56
95 % 51 220 63
90 % 51 220 68
70 % 51 220 78
50 % 51 220 108
40 % 51 220 131
30 % 51 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 258 26
95 % 58 258 37
90 % 58 258 43
70 % 58 258 52
50 % 67 353 31
40 % 67 353 41
30 % 67 353 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 28
95 % 57 256 38
90 % 57 256 44
70 % 57 256 53
50 % 66 349 34
40 % 66 350 44
30 % 66 350 60
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 372
95 % 57 254 47
90 % 57 254 52
70 % 57 254 62
50 % 57 254 87
40 % 57 254 108
30 % 57 254 120
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 245 38
95 % 57 245 53
90 % 57 245 57
70 % 57 245 68
50 % 57 245 93
40 % 57 245 117
30 % 57 245 131
Entity #22 | Chains: X
A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 219 44
95 % 51 219 64
90 % 51 219 69
70 % 51 219 79
50 % 53 273 78
40 % 53 273 99
30 % 53 273 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 248 37
95 % 57 256 39
90 % 57 256 45
70 % 57 256 54
50 % 66 350 33
40 % 66 351 42
30 % 66 351 59
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 32
95 % 57 255 42
90 % 57 255 47
70 % 57 255 56
50 % 67 354 30
40 % 67 354 40
30 % 67 356 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 260 24
95 % 64 266 33
90 % 64 266 36
70 % 64 266 45
50 % 64 266 83
40 % 64 266 101
30 % 73 309 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 259 25
95 % 58 260 36
90 % 58 260 41
70 % 58 260 50
50 % 66 309 53
40 % 66 310 66
30 % 66 310 86
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 255 30
95 % 58 255 40
90 % 58 259 42
70 % 58 259 51
50 % 69 356 29
40 % 70 358 39
30 % 76 434 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 91 196
95 % 57 255 44
90 % 57 255 49
70 % 57 255 58
50 % 66 350 36
40 % 66 350 45
30 % 71 425 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.