Sequence Similarity Clusters for the Entities in PDB 2UXC

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 254 36
95 % 57 255 49
90 % 57 255 54
70 % 57 255 64
50 % 75 366 28
40 % 75 366 38
30 % 80 440 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 256 34
95 % 57 256 45
90 % 57 256 50
70 % 57 256 59
50 % 69 360 35
40 % 76 442 20
30 % 76 443 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 208 46
95 % 57 263 36
90 % 57 263 41
70 % 69 371 21
50 % 69 372 27
40 % 69 372 37
30 % 69 372 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 257 32
95 % 57 257 43
90 % 57 257 48
70 % 57 257 57
50 % 69 365 32
40 % 69 365 44
30 % 74 441 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 35
95 % 57 255 50
90 % 57 255 55
70 % 57 256 62
50 % 57 256 88
40 % 57 256 108
30 % 57 256 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 29
95 % 59 264 35
90 % 59 264 40
70 % 59 264 50
50 % 74 373 26
40 % 74 374 36
30 % 74 374 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 251 37
95 % 57 256 47
90 % 57 256 52
70 % 57 256 61
50 % 57 256 87
40 % 57 257 107
30 % 69 363 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 87 225
95 % 57 250 51
90 % 57 254 56
70 % 57 254 66
50 % 57 254 90
40 % 57 254 112
30 % 57 254 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 170 57
95 % 51 221 64
90 % 51 221 69
70 % 51 221 79
50 % 51 221 111
40 % 51 221 132
30 % 51 221 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 259 27
95 % 58 259 38
90 % 58 259 44
70 % 58 259 53
50 % 70 363 31
40 % 70 363 42
30 % 70 363 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 256 30
95 % 57 257 39
90 % 57 257 45
70 % 57 257 54
50 % 69 359 34
40 % 69 360 45
30 % 69 360 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 384
95 % 57 255 48
90 % 57 255 53
70 % 57 255 63
50 % 57 255 89
40 % 57 255 111
30 % 57 255 123
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 246 39
95 % 57 246 54
90 % 57 246 59
70 % 57 246 69
50 % 57 246 96
40 % 57 246 119
30 % 57 246 133
Entity #22 | Chains: X
A-SITE MESSENGER RNA FRAGMENT CGGG rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 220 45
95 % 51 220 65
90 % 51 220 70
70 % 51 220 80
50 % 53 280 77
40 % 53 280 99
30 % 53 280 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 249 38
95 % 57 257 40
90 % 57 257 46
70 % 57 257 55
50 % 69 360 33
40 % 69 361 43
30 % 69 361 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 256 33
95 % 57 256 44
90 % 57 256 49
70 % 57 256 58
50 % 70 364 30
40 % 70 364 41
30 % 70 366 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 261 25
95 % 64 267 34
90 % 64 267 37
70 % 64 267 46
50 % 64 267 84
40 % 64 267 103
30 % 76 313 82
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 260 26
95 % 58 261 37
90 % 58 261 42
70 % 58 261 51
50 % 69 313 56
40 % 69 314 74
30 % 69 314 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 256 31
95 % 58 256 42
90 % 58 260 43
70 % 58 260 52
50 % 72 366 29
40 % 73 368 39
30 % 79 447 31
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 91 198
95 % 57 256 46
90 % 57 256 51
70 % 57 256 60
50 % 69 360 36
40 % 69 360 46
30 % 74 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.