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Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXB
Sequence Clusters for the Sequence Entities in PDB 2UXB
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 252 29
95% 199 254 48
90% 199 254 51
70% 199 254 63
50% 253 369 34
40% 253 369 48
30% 253 374 67
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 255 27
95% 199 255 44
90% 199 255 47
70% 199 255 59
50% 247 363 42
40% 257 403 39
30% 257 403 53
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 224 37
95% 199 262 36
90% 199 262 38
70% 247 375 24
50% 247 375 33
40% 247 375 47
30% 247 375 71
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 256 24
95% 199 256 42
90% 199 256 45
70% 199 256 57
50% 247 365 39
40% 247 365 53
30% 255 401 57
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 254 28
95% 199 254 49
90% 199 254 52
70% 199 254 64
50% 199 254 99
40% 199 254 124
30% 199 254 144
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 258 21
95% 203 263 35
90% 203 263 37
70% 203 263 48
50% 254 376 32
40% 254 376 45
30% 254 376 69
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 250 31
95% 199 255 46
90% 199 255 49
70% 199 255 61
50% 199 255 97
40% 199 255 122
30% 247 363 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 92 219
95% 198 249 51
90% 199 253 53
70% 199 253 65
50% 199 253 100
40% 199 253 126
30% 199 253 146
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 172 49
95% 183 221 64
90% 183 221 68
70% 183 221 81
50% 183 221 116
40% 183 221 144
30% 183 221 166
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 183 223 38
95% 183 223 63
90% 183 223 67
70% 183 223 80
50% 248 366 38
40% 248 366 52
30% 248 366 75
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 255 25
95% 199 256 39
90% 199 256 43
70% 199 256 55
50% 199 256 96
40% 247 363 55
30% 247 363 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 61 359
95% 199 254 47
90% 199 254 50
70% 199 254 62
50% 199 254 98
40% 199 254 123
30% 199 254 143
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 238 34
95% 199 238 55
90% 199 238 59
70% 199 238 71
50% 199 238 110
40% 199 238 133
30% 199 238 153
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 219 39
95% 182 219 66
90% 182 219 70
70% 182 219 83
50% 206 282 81
40% 206 282 101
30% 206 282 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 248 32
95% 199 256 40
90% 199 256 44
70% 199 256 56
50% 247 363 40
40% 247 364 54
30% 247 364 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 255 26
95% 199 255 43
90% 199 255 46
70% 199 255 58
50% 248 367 37
40% 248 367 51
30% 248 369 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 260 18
95% 207 266 34
90% 207 266 36
70% 207 266 47
50% 207 266 88
40% 207 266 112
30% 233 313 95
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 259 20
95% 200 260 37
90% 200 260 39
70% 200 260 51
50% 227 308 57
40% 227 309 74
30% 227 309 97
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 255 23
95% 199 255 41
90% 200 259 40
70% 200 259 52
50% 250 369 36
40% 251 371 49
30% 260 408 50
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 113 134
95% 199 255 45
90% 199 255 48
70% 199 255 60
50% 247 363 41
40% 247 363 56
30% 255 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.