Sequence Similarity Clusters for the Entities in PDB 2UXB

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 269 39
95 % 214 270 53
90 % 214 270 58
70 % 214 270 68
50 % 253 421 26
40 % 253 421 38
30 % 285 528 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 271 35
95 % 214 271 49
90 % 214 271 54
70 % 214 271 64
50 % 247 415 32
40 % 281 537 19
30 % 281 537 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 217 51
95 % 214 278 39
90 % 214 278 44
70 % 247 422 19
50 % 247 432 24
40 % 247 432 35
30 % 247 432 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 272 33
95 % 214 272 46
90 % 214 272 51
70 % 214 272 62
50 % 250 419 31
40 % 250 419 43
30 % 282 527 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 270 36
95 % 214 270 54
90 % 214 270 59
70 % 214 279 54
50 % 214 279 90
40 % 214 279 113
30 % 214 279 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 274 30
95 % 218 279 38
90 % 218 279 43
70 % 218 279 53
50 % 254 428 25
40 % 254 433 34
30 % 254 433 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 266 41
95 % 214 271 51
90 % 214 271 56
70 % 214 271 66
50 % 214 278 91
40 % 214 278 114
30 % 250 413 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 87 258
95 % 213 265 56
90 % 214 269 60
70 % 214 269 69
50 % 214 269 94
40 % 214 269 117
30 % 214 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 185 56
95 % 192 236 65
90 % 192 236 69
70 % 192 236 81
50 % 192 236 111
40 % 192 236 135
30 % 192 236 144
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 274 29
95 % 215 274 42
90 % 215 274 48
70 % 215 274 58
50 % 248 421 28
40 % 248 424 40
30 % 248 424 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 271 31
95 % 214 272 43
90 % 214 272 49
70 % 214 272 59
50 % 247 409 36
40 % 247 414 45
30 % 247 414 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 51 524
95 % 214 270 52
90 % 214 270 57
70 % 214 270 67
50 % 214 270 93
40 % 214 270 116
30 % 214 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 261 43
95 % 214 261 59
90 % 214 261 63
70 % 214 261 74
50 % 214 261 98
40 % 214 261 121
30 % 214 261 133
Entity #22 | Chains: X
A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Y
ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 192 235 48
95 % 192 235 66
90 % 192 235 70
70 % 192 235 82
50 % 203 309 84
40 % 203 309 103
30 % 203 309 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 212 264 42
95 % 214 272 44
90 % 214 272 50
70 % 214 272 60
50 % 247 416 29
40 % 247 421 41
30 % 247 421 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 271 34
95 % 214 271 48
90 % 214 271 53
70 % 214 271 63
50 % 248 417 30
40 % 248 417 42
30 % 248 419 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 276 27
95 % 222 282 37
90 % 222 282 42
70 % 222 282 51
50 % 222 282 88
40 % 222 282 110
30 % 246 355 95
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 275 28
95 % 215 276 41
90 % 215 276 46
70 % 215 276 56
50 % 243 356 66
40 % 243 361 84
30 % 243 361 96
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 271 32
95 % 214 271 45
90 % 215 275 47
70 % 215 275 57
50 % 250 421 27
40 % 251 427 37
30 % 285 542 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 91 220
95 % 214 271 50
90 % 214 271 55
70 % 214 271 65
50 % 247 411 35
40 % 247 411 48
30 % 279 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.