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An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXB
Sequence Clusters for the Sequence Entities in PDB 2UXB
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 187 28
95% 147 188 47
90% 147 188 50
70% 147 188 60
50% 177 269 34
40% 177 269 45
30% 177 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 189 26
95% 147 189 43
90% 147 189 46
70% 147 189 56
50% 171 263 41
40% 193 316 35
30% 193 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 158 35
95% 147 196 35
90% 147 196 37
70% 171 275 24
50% 171 275 33
40% 171 275 44
30% 171 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 190 23
95% 147 190 41
90% 147 190 44
70% 147 190 54
50% 174 268 38
40% 174 268 51
30% 194 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 188 27
95% 147 188 48
90% 147 188 51
70% 147 188 61
50% 147 188 94
40% 147 188 119
30% 147 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 192 21
95% 151 197 33
90% 151 197 35
70% 151 197 47
50% 178 276 32
40% 178 276 43
30% 178 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 184 29
95% 147 189 45
90% 147 189 48
70% 147 189 58
50% 147 189 92
40% 147 189 117
30% 174 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 79 222
95% 146 183 49
90% 147 187 52
70% 147 187 62
50% 147 187 95
40% 147 187 120
30% 147 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 119 49
95% 136 168 61
90% 136 168 64
70% 136 168 80
50% 136 168 117
40% 136 168 139
30% 136 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 170 37
95% 136 170 59
90% 136 170 63
70% 136 170 78
50% 172 266 37
40% 172 266 50
30% 172 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 189 24
95% 147 190 38
90% 147 190 42
70% 147 190 52
50% 147 190 91
40% 171 263 54
30% 171 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 48 365
95% 147 188 46
90% 147 188 49
70% 147 188 59
50% 147 188 93
40% 147 188 118
30% 147 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 179 34
95% 147 179 54
90% 147 179 56
70% 147 179 69
50% 147 179 105
40% 147 179 132
30% 147 179 151
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 166 38
95% 135 166 63
90% 135 166 66
70% 135 166 82
50% 145 205 77
40% 145 205 101
30% 145 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 182 31
95% 147 190 39
90% 147 190 43
70% 147 190 53
50% 171 263 39
40% 171 264 52
30% 171 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 189 25
95% 147 189 42
90% 147 189 45
70% 147 189 55
50% 172 267 36
40% 172 267 49
30% 172 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 194 19
95% 155 200 29
90% 155 200 30
70% 155 200 45
50% 155 200 86
40% 155 200 108
30% 171 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 193 20
95% 148 194 36
90% 148 194 38
70% 148 194 50
50% 168 235 56
40% 168 236 73
30% 168 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 189 22
95% 147 189 40
90% 148 193 39
70% 148 193 51
50% 174 269 35
40% 175 271 46
30% 196 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 87 159
95% 147 189 44
90% 147 189 47
70% 147 189 57
50% 171 263 40
40% 171 263 55
30% 191 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.