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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXB
Sequence Clusters for the Sequence Entities in PDB 2UXB
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 218 36
95% 177 219 51
90% 177 219 55
70% 177 219 67
50% 208 306 33
40% 208 306 43
30% 228 360 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 220 34
95% 177 220 47
90% 177 220 51
70% 177 220 62
50% 202 300 42
40% 224 361 30
30% 224 362 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 183 46
95% 177 227 38
90% 177 227 42
70% 202 311 23
50% 202 312 32
40% 202 312 42
30% 202 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 221 32
95% 177 221 45
90% 177 221 49
70% 177 221 60
50% 205 305 38
40% 205 305 50
30% 225 361 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 219 35
95% 177 219 52
90% 177 219 56
70% 177 220 65
50% 177 220 92
40% 177 220 113
30% 177 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 223 29
95% 181 228 26
90% 181 228 31
70% 181 228 43
50% 209 313 29
40% 209 314 40
30% 209 314 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 215 37
95% 177 220 49
90% 177 220 53
70% 177 220 64
50% 177 220 91
40% 177 221 112
30% 205 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 80 224
95% 176 214 56
90% 177 218 58
70% 177 218 69
50% 177 218 94
40% 177 218 116
30% 177 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 145 55
95% 162 194 64
90% 162 194 66
70% 162 194 79
50% 162 194 111
40% 162 194 130
30% 162 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 223 27
95% 178 223 41
90% 178 223 46
70% 178 223 57
50% 203 303 37
40% 203 303 48
30% 203 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 220 30
95% 177 221 42
90% 177 221 47
70% 177 221 58
50% 202 299 41
40% 202 300 51
30% 202 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 367
95% 177 219 50
90% 177 219 54
70% 177 219 66
50% 177 219 93
40% 177 219 114
30% 177 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 210 40
95% 177 210 59
90% 177 210 62
70% 177 210 73
50% 177 210 98
40% 177 210 120
30% 177 210 133
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 193 45
95% 162 193 65
90% 162 193 67
70% 162 193 80
50% 172 236 78
40% 172 236 99
30% 172 236 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 213 38
95% 177 221 43
90% 177 221 48
70% 177 221 59
50% 202 300 39
40% 202 301 49
30% 202 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 220 33
95% 177 220 46
90% 177 220 50
70% 177 220 61
50% 203 304 36
40% 203 304 47
30% 203 306 65
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 225 24
95% 185 231 24
90% 185 231 29
70% 185 231 41
50% 185 231 83
40% 185 231 105
30% 202 270 79
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 224 26
95% 178 225 40
90% 178 225 44
70% 178 225 55
50% 199 268 51
40% 199 269 62
30% 199 269 81
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 220 31
95% 177 220 44
90% 178 224 45
70% 178 224 56
50% 205 306 34
40% 206 308 44
30% 227 365 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 90 167
95% 177 220 48
90% 177 220 52
70% 177 220 63
50% 202 300 43
40% 202 300 52
30% 222 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.