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Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXB
Sequence Clusters for the Sequence Entities in PDB 2UXB
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 194 28
95% 153 195 46
90% 153 195 48
70% 153 195 59
50% 183 276 35
40% 183 276 45
30% 203 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 196 26
95% 153 196 42
90% 153 196 44
70% 153 196 55
50% 177 270 42
40% 199 325 36
30% 199 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 165 35
95% 153 203 31
90% 153 203 33
70% 177 282 24
50% 177 282 34
40% 177 282 44
30% 177 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 197 23
95% 153 197 38
90% 153 197 40
70% 153 197 52
50% 180 275 39
40% 180 275 51
30% 200 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 195 27
95% 153 195 47
90% 153 195 49
70% 153 195 60
50% 153 195 92
40% 153 195 116
30% 153 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 199 19
95% 157 204 30
90% 157 204 32
70% 157 204 44
50% 184 283 33
40% 184 283 43
30% 184 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 191 29
95% 153 196 44
90% 153 196 46
70% 153 196 57
50% 153 196 89
40% 153 196 114
30% 180 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 80 221
95% 152 190 49
90% 153 194 50
70% 153 194 61
50% 153 194 93
40% 153 194 117
30% 153 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 123 59
95% 140 172 70
90% 140 172 74
70% 140 172 88
50% 140 172 125
40% 140 172 146
30% 140 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 174 47
95% 140 174 69
90% 140 174 73
70% 140 174 87
50% 178 273 38
40% 178 273 49
30% 178 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 196 24
95% 153 197 35
90% 153 197 38
70% 153 197 50
50% 153 197 88
40% 177 270 53
30% 177 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 354
95% 153 195 45
90% 153 195 47
70% 153 195 58
50% 153 195 91
40% 153 195 115
30% 153 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 186 32
95% 153 186 51
90% 153 186 54
70% 153 186 66
50% 153 186 110
40% 153 186 133
30% 153 186 151
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 171 48
95% 140 171 72
90% 140 171 76
70% 140 171 90
50% 150 210 76
40% 150 210 101
30% 150 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 189 30
95% 153 197 36
90% 153 197 39
70% 153 197 51
50% 177 270 40
40% 177 271 52
30% 177 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 196 25
95% 153 196 40
90% 153 196 42
70% 153 196 54
50% 178 274 37
40% 178 274 48
30% 178 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 201 17
95% 161 207 29
90% 161 207 31
70% 161 207 42
50% 161 207 81
40% 161 207 108
30% 177 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 200 18
95% 154 201 33
90% 154 201 35
70% 154 201 46
50% 174 242 55
40% 174 243 71
30% 174 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 196 22
95% 153 196 37
90% 154 200 36
70% 154 200 47
50% 180 276 36
40% 181 278 46
30% 202 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 90 140
95% 153 196 43
90% 153 196 45
70% 153 196 56
50% 177 270 41
40% 177 270 54
30% 197 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.