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Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Sequence Clustering and Redundancy Reduction Results
2UXB
Sequence Clusters for the Sequence Entities in PDB 2UXB
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 217 36
95% 176 218 51
90% 176 218 55
70% 176 218 66
50% 208 306 31
40% 208 306 42
30% 228 368 40
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 219 34
95% 176 219 47
90% 176 219 51
70% 176 219 61
50% 202 300 42
40% 224 369 30
30% 224 370 38
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 182 46
95% 176 226 39
90% 176 226 43
70% 202 311 22
50% 202 312 30
40% 202 312 41
30% 202 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 220 32
95% 176 220 45
90% 176 220 49
70% 176 220 59
50% 205 305 39
40% 205 305 50
30% 225 369 44
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 218 35
95% 176 218 52
90% 176 218 56
70% 176 219 64
50% 176 219 92
40% 176 219 114
30% 176 219 128
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 222 29
95% 180 227 36
90% 180 227 40
70% 180 227 52
50% 209 313 29
40% 209 314 39
30% 209 314 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 214 37
95% 176 219 49
90% 176 219 53
70% 176 219 63
50% 176 219 91
40% 176 220 113
30% 205 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 80 226
95% 175 213 56
90% 176 217 58
70% 176 217 69
50% 176 217 94
40% 176 217 116
30% 176 217 130
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 145 55
95% 162 194 64
90% 162 194 67
70% 162 194 79
50% 162 194 113
40% 162 194 131
30% 162 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 222 28
95% 177 222 41
90% 177 222 46
70% 177 222 56
50% 203 303 38
40% 203 303 48
30% 203 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 219 30
95% 176 220 42
90% 176 220 47
70% 176 220 57
50% 202 299 41
40% 202 300 51
30% 202 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 371
95% 176 218 50
90% 176 218 54
70% 176 218 65
50% 176 218 93
40% 176 218 115
30% 176 218 129
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 209 40
95% 176 209 59
90% 176 209 62
70% 176 209 73
50% 176 209 100
40% 176 209 123
30% 176 209 135
Entity #22: Chains: X - A-SITE MESSENGER RNA FRAGMENT GGGU rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 193 45
95% 162 193 65
90% 162 193 68
70% 162 193 80
50% 173 237 77
40% 173 237 102
30% 173 237 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 212 38
95% 176 220 43
90% 176 220 48
70% 176 220 58
50% 202 300 40
40% 202 301 49
30% 202 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 219 33
95% 176 219 46
90% 176 219 50
70% 176 219 60
50% 203 304 37
40% 203 304 47
30% 203 306 63
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 224 25
95% 184 230 24
90% 184 230 29
70% 184 230 41
50% 184 230 83
40% 184 230 108
30% 201 269 80
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 223 27
95% 177 224 40
90% 177 224 44
70% 177 224 54
50% 198 267 51
40% 198 268 64
30% 198 268 83
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 219 31
95% 176 219 44
90% 177 223 45
70% 177 223 55
50% 205 306 35
40% 206 308 43
30% 227 373 37
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 89 181
95% 176 219 48
90% 176 219 52
70% 176 219 62
50% 202 300 43
40% 202 300 52
30% 222 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.