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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUC
Sequence Clusters for the Sequence Entities in PDB 2UUC
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 265 27
95% 76 267 47
90% 76 267 49
70% 76 267 59
50% 112 382 34
40% 112 382 45
30% 112 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 268 25
95% 76 268 43
90% 76 268 45
70% 76 268 55
50% 106 376 41
40% 110 416 40
30% 110 416 52
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 237 35
95% 76 275 35
90% 76 275 37
70% 106 388 24
50% 106 388 33
40% 106 388 44
30% 106 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 269 22
95% 76 269 41
90% 76 269 43
70% 76 269 53
50% 106 378 38
40% 106 378 51
30% 108 414 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 267 26
95% 76 267 48
90% 76 267 50
70% 76 267 60
50% 76 267 93
40% 76 267 119
30% 76 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 271 20
95% 80 276 32
90% 80 276 34
70% 80 276 47
50% 113 389 32
40% 113 389 43
30% 113 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 263 28
95% 76 268 45
90% 76 268 47
70% 76 268 57
50% 76 268 91
40% 76 268 117
30% 106 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 170 53
95% 76 262 49
90% 76 266 51
70% 76 266 61
50% 76 266 94
40% 76 266 120
30% 76 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 183 47
95% 71 232 61
90% 71 232 64
70% 71 232 78
50% 71 232 113
40% 71 232 138
30% 71 232 158
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 234 37
95% 71 234 59
90% 71 234 63
70% 71 234 77
50% 107 379 37
40% 107 379 49
30% 107 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 268 23
95% 76 269 38
90% 76 269 41
70% 76 269 51
50% 76 269 90
40% 106 376 53
30% 106 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 206 42
95% 76 267 46
90% 76 267 48
70% 76 267 58
50% 76 267 92
40% 76 267 118
30% 76 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 249 33
95% 76 249 52
90% 76 249 55
70% 76 249 66
50% 76 249 103
40% 76 249 130
30% 76 249 150
Entity #22: Chains: X - 5'-R(*GP*UP*AP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 230 38
95% 70 230 62
90% 70 230 65
70% 70 230 79
50% 82 293 73
40% 82 293 97
30% 82 293 118
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 261 29
95% 76 269 39
90% 76 269 42
70% 76 269 52
50% 106 376 39
40% 106 377 52
30% 106 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 268 24
95% 76 268 42
90% 76 268 44
70% 76 268 54
50% 107 380 36
40% 107 380 48
30% 107 382 70
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 273 18
95% 84 279 29
90% 84 279 30
70% 84 279 44
50% 84 279 82
40% 84 279 106
30% 104 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 272 19
95% 77 273 36
90% 77 273 38
70% 77 273 49
50% 96 321 56
40% 96 322 73
30% 96 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 268 21
95% 77 268 40
90% 77 272 39
70% 77 272 50
50% 109 382 35
40% 110 384 46
30% 113 421 51
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 155 76
95% 76 268 44
90% 76 268 46
70% 76 268 56
50% 106 376 40
40% 106 376 54
30% 108 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.