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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUC
Sequence Clusters for the Sequence Entities in PDB 2UUC
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 197 29
95% 66 198 46
90% 66 198 48
70% 66 198 61
50% 87 283 35
40% 87 283 45
30% 100 334 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 199 26
95% 66 199 40
90% 66 199 42
70% 66 199 54
50% 81 277 41
40% 96 335 35
30% 96 336 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 166 36
95% 66 206 32
90% 66 206 34
70% 81 288 24
50% 81 289 34
40% 81 289 44
30% 81 289 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 200 23
95% 66 200 38
90% 66 200 40
70% 66 200 51
50% 84 282 39
40% 84 282 50
30% 97 335 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 198 27
95% 66 198 47
90% 66 198 49
70% 66 199 57
50% 66 199 90
40% 66 199 113
30% 66 199 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 202 21
95% 70 207 31
90% 70 207 33
70% 70 207 43
50% 88 290 33
40% 88 291 43
30% 88 291 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 194 30
95% 66 199 42
90% 66 199 44
70% 66 199 56
50% 66 199 89
40% 66 200 112
30% 84 280 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 113 66
95% 66 193 50
90% 66 197 50
70% 66 197 62
50% 66 197 94
40% 66 197 117
30% 66 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 125 59
95% 61 174 72
90% 61 174 76
70% 61 174 90
50% 61 174 131
40% 61 174 149
30% 61 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 202 20
95% 67 202 34
90% 67 202 37
70% 67 202 47
50% 82 280 38
40% 82 280 49
30% 82 280 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 199 24
95% 66 200 35
90% 66 200 38
70% 66 200 48
50% 81 276 43
40% 81 277 52
30% 81 277 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 149 54
95% 66 198 45
90% 66 198 47
70% 66 198 60
50% 66 198 93
40% 66 198 115
30% 66 198 138
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 32
95% 66 189 52
90% 66 189 55
70% 66 189 68
50% 66 189 112
40% 66 189 135
30% 66 189 153
Entity #22: Chains: X - 5'-R(*GP*UP*AP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 173 48
95% 60 173 73
90% 60 173 77
70% 60 173 92
50% 63 214 78
40% 63 214 102
30% 63 214 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 192 31
95% 66 200 36
90% 66 200 39
70% 66 200 49
50% 81 277 40
40% 81 278 51
30% 81 278 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 199 25
95% 66 199 39
90% 66 199 41
70% 66 199 52
50% 82 281 37
40% 82 281 48
30% 82 283 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 204 18
95% 74 210 30
90% 74 210 32
70% 74 210 42
50% 74 210 83
40% 74 210 107
30% 88 249 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 203 19
95% 67 204 33
90% 67 204 35
70% 67 204 44
50% 83 247 56
40% 83 248 71
30% 83 248 95
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 199 22
95% 67 199 37
90% 67 203 36
70% 67 203 45
50% 84 283 36
40% 85 285 46
30% 99 339 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 109 86
95% 66 199 41
90% 66 199 43
70% 66 199 55
50% 81 277 42
40% 81 277 54
30% 94 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.