POP-OUT | CLOSE
 
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUB
Sequence Clusters for the Sequence Entities in PDB 2UUB
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 257 29
95% 13 259 47
90% 13 259 51
70% 13 259 61
50% 21 374 34
40% 21 374 46
30% 21 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 260 26
95% 13 260 43
90% 13 260 46
70% 13 260 57
50% 15 368 42
40% 19 408 40
30% 19 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 229 36
95% 13 267 36
90% 13 267 38
70% 15 380 24
50% 15 380 33
40% 15 380 45
30% 15 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 261 22
95% 13 261 41
90% 13 261 43
70% 13 261 55
50% 15 370 39
40% 15 370 53
30% 17 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 259 27
95% 13 259 48
90% 13 259 52
70% 13 259 62
50% 13 259 97
40% 13 259 123
30% 13 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 263 20
95% 14 268 35
90% 14 268 37
70% 14 268 48
50% 19 381 32
40% 19 381 43
30% 19 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 255 30
95% 13 260 45
90% 13 260 48
70% 13 260 59
50% 13 260 94
40% 13 260 120
30% 15 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 162 57
95% 13 254 50
90% 13 258 53
70% 13 258 63
50% 13 258 99
40% 13 258 124
30% 13 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 175 50
95% 13 224 63
90% 13 224 67
70% 13 224 81
50% 13 224 115
40% 13 224 141
30% 13 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 226 37
95% 14 226 62
90% 14 226 65
70% 14 226 80
50% 16 371 38
40% 16 371 51
30% 16 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 260 24
95% 13 261 38
90% 13 261 41
70% 13 261 52
50% 13 261 92
40% 15 368 55
30% 15 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 198 43
95% 13 259 46
90% 13 259 50
70% 13 259 60
50% 13 259 96
40% 13 259 122
30% 13 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 241 34
95% 13 241 55
90% 13 241 58
70% 13 241 69
50% 13 241 107
40% 13 241 130
30% 13 241 151
Entity #22: Chains: X - 5'-R(*GP*UP*UP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 222 39
95% 13 222 65
90% 13 222 69
70% 13 222 82
50% 13 285 76
40% 13 285 100
30% 13 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 253 31
95% 13 261 39
90% 13 261 42
70% 13 261 53
50% 15 368 40
40% 15 369 54
30% 15 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 260 25
95% 13 260 42
90% 13 260 44
70% 13 260 56
50% 15 372 37
40% 15 372 50
30% 15 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 265 18
95% 20 271 33
90% 20 271 35
70% 20 271 47
50% 20 271 87
40% 20 271 112
30% 24 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 264 19
95% 14 265 37
90% 14 265 39
70% 14 265 49
50% 17 313 56
40% 17 314 72
30% 17 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 260 21
95% 14 260 40
90% 14 264 40
70% 14 264 50
50% 17 374 35
40% 18 376 47
30% 21 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 147 79
95% 13 260 44
90% 13 260 47
70% 13 260 58
50% 15 368 41
40% 15 368 56
30% 17 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.