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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUB
Sequence Clusters for the Sequence Entities in PDB 2UUB
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 193 28
95% 17 194 45
90% 17 194 47
70% 17 194 58
50% 24 275 34
40% 24 275 45
30% 24 280 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 195 26
95% 17 195 41
90% 17 195 43
70% 17 195 54
50% 18 269 41
40% 23 322 35
30% 23 322 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 164 35
95% 17 202 32
90% 17 202 33
70% 18 281 23
50% 18 281 33
40% 18 281 44
30% 18 281 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 196 23
95% 17 196 39
90% 17 196 41
70% 17 196 52
50% 18 274 38
40% 18 274 50
30% 21 323 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 194 27
95% 17 194 46
90% 17 194 48
70% 17 194 59
50% 17 194 92
40% 17 194 115
30% 17 194 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 198 21
95% 18 203 30
90% 18 203 31
70% 18 203 43
50% 22 282 32
40% 22 282 42
30% 22 282 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 190 29
95% 17 195 43
90% 17 195 45
70% 17 195 56
50% 17 195 89
40% 17 195 113
30% 18 272 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 110 54
95% 17 189 48
90% 17 193 50
70% 17 193 61
50% 17 193 95
40% 17 193 120
30% 17 193 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 123 47
95% 17 172 58
90% 17 172 62
70% 17 172 76
50% 17 172 111
40% 17 172 137
30% 17 172 156
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 174 36
95% 18 174 57
90% 18 174 61
70% 18 174 75
50% 19 272 37
40% 19 272 49
30% 19 272 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 195 24
95% 17 196 36
90% 17 196 39
70% 17 196 50
50% 17 196 87
40% 18 269 52
30% 18 269 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 146 42
95% 17 194 44
90% 17 194 46
70% 17 194 57
50% 17 194 91
40% 17 194 114
30% 17 194 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 185 32
95% 17 185 51
90% 17 185 54
70% 17 185 65
50% 17 185 101
40% 17 185 127
30% 17 185 147
Entity #22: Chains: X - 5'-R(*GP*UP*UP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 171 37
95% 17 171 59
90% 17 171 63
70% 17 171 77
50% 17 210 73
40% 17 210 97
30% 17 210 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 188 30
95% 17 196 37
90% 17 196 40
70% 17 196 51
50% 18 269 39
40% 18 270 51
30% 18 270 73
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 195 25
95% 17 195 40
90% 17 195 42
70% 17 195 53
50% 18 273 36
40% 18 273 48
30% 18 275 70
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 200 17
95% 24 206 29
90% 24 206 30
70% 24 206 40
50% 24 206 80
40% 24 206 105
30% 27 243 90
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 199 20
95% 18 200 33
90% 18 200 34
70% 18 200 47
50% 20 241 54
40% 20 242 70
30% 20 242 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 195 22
95% 18 195 38
90% 18 199 35
70% 18 199 48
50% 20 275 35
40% 21 277 46
30% 25 327 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 106 73
95% 17 195 42
90% 17 195 44
70% 17 195 55
50% 18 269 40
40% 18 269 53
30% 21 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.