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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUA
Sequence Clusters for the Sequence Entities in PDB 2UUA
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 218 36
95% 55 219 51
90% 55 219 55
70% 55 219 67
50% 68 306 33
40% 68 306 43
30% 76 360 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 220 34
95% 55 220 47
90% 55 220 51
70% 55 220 62
50% 62 300 42
40% 72 361 30
30% 72 362 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 183 46
95% 55 227 38
90% 55 227 42
70% 62 311 23
50% 62 312 32
40% 62 312 42
30% 62 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 221 32
95% 55 221 45
90% 55 221 49
70% 55 221 60
50% 62 305 38
40% 62 305 50
30% 70 361 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 219 35
95% 55 219 52
90% 55 219 56
70% 55 220 65
50% 55 220 92
40% 55 220 113
30% 55 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 223 29
95% 57 228 26
90% 57 228 31
70% 57 228 43
50% 67 313 29
40% 67 314 40
30% 67 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 215 37
95% 55 220 49
90% 55 220 53
70% 55 220 64
50% 55 220 91
40% 55 221 112
30% 62 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 134 59
95% 55 214 56
90% 55 218 58
70% 55 218 69
50% 55 218 94
40% 55 218 116
30% 55 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 145 55
95% 52 194 64
90% 52 194 66
70% 52 194 79
50% 52 194 111
40% 52 194 130
30% 52 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 223 27
95% 56 223 41
90% 56 223 46
70% 56 223 57
50% 63 303 37
40% 63 303 48
30% 63 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 220 30
95% 55 221 42
90% 55 221 47
70% 55 221 58
50% 62 299 41
40% 62 300 51
30% 62 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 170 49
95% 55 219 50
90% 55 219 54
70% 55 219 66
50% 55 219 93
40% 55 219 114
30% 55 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 210 40
95% 55 210 59
90% 55 210 62
70% 55 210 73
50% 55 210 98
40% 55 210 120
30% 55 210 133
Entity #22: Chains: X - 5'-R(*GP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 193 45
95% 52 193 65
90% 52 193 67
70% 52 193 80
50% 54 236 78
40% 54 236 99
30% 54 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 213 38
95% 55 221 43
90% 55 221 48
70% 55 221 59
50% 62 300 39
40% 62 301 49
30% 62 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 220 33
95% 55 220 46
90% 55 220 50
70% 55 220 61
50% 63 304 36
40% 63 304 47
30% 63 306 65
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 225 24
95% 62 231 24
90% 62 231 29
70% 62 231 41
50% 62 231 83
40% 62 231 105
30% 69 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 224 26
95% 56 225 40
90% 56 225 44
70% 56 225 55
50% 62 268 51
40% 62 269 62
30% 62 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 220 31
95% 56 220 44
90% 56 224 45
70% 56 224 56
50% 65 306 34
40% 66 308 44
30% 75 365 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 130 75
95% 55 220 48
90% 55 220 52
70% 55 220 63
50% 62 300 43
40% 62 300 52
30% 70 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.