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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UUA
Sequence Clusters for the Sequence Entities in PDB 2UUA
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 265 27
95% 49 267 47
90% 49 267 49
70% 49 267 59
50% 71 382 34
40% 71 382 45
30% 71 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 268 25
95% 49 268 43
90% 49 268 45
70% 49 268 55
50% 65 376 41
40% 79 436 38
30% 79 436 51
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 237 35
95% 49 275 35
90% 49 275 37
70% 65 388 24
50% 65 388 33
40% 65 388 44
30% 65 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 269 22
95% 49 269 41
90% 49 269 43
70% 49 269 53
50% 65 378 38
40% 65 378 51
30% 77 434 54
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 267 26
95% 49 267 48
90% 49 267 50
70% 49 267 60
50% 49 267 93
40% 49 267 119
30% 49 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 271 20
95% 51 276 32
90% 51 276 34
70% 51 276 47
50% 70 389 32
40% 70 389 43
30% 70 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 263 28
95% 49 268 45
90% 49 268 47
70% 49 268 57
50% 49 268 91
40% 49 268 117
30% 65 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 170 53
95% 49 262 49
90% 49 266 51
70% 49 266 61
50% 49 266 94
40% 49 266 120
30% 49 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 183 47
95% 46 232 61
90% 46 232 64
70% 46 232 78
50% 46 232 113
40% 46 232 138
30% 46 232 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 234 37
95% 47 234 59
90% 47 234 63
70% 47 234 77
50% 66 379 37
40% 66 379 49
30% 66 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 268 23
95% 49 269 38
90% 49 269 41
70% 49 269 51
50% 49 269 90
40% 65 376 53
30% 65 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 206 42
95% 49 267 46
90% 49 267 48
70% 49 267 58
50% 49 267 92
40% 49 267 118
30% 49 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 249 33
95% 49 249 52
90% 49 249 55
70% 49 249 66
50% 49 249 103
40% 49 249 130
30% 49 249 150
Entity #22: Chains: X - 5'-R(*GP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - 5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3' rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 230 38
95% 46 230 62
90% 46 230 65
70% 46 230 79
50% 54 293 73
40% 54 293 98
30% 54 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 261 29
95% 49 269 39
90% 49 269 42
70% 49 269 52
50% 65 376 39
40% 65 377 52
30% 65 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 268 24
95% 49 268 42
90% 49 268 44
70% 49 268 54
50% 66 380 36
40% 66 380 48
30% 66 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 273 18
95% 56 279 29
90% 56 279 30
70% 56 279 44
50% 56 279 82
40% 56 279 106
30% 66 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 272 19
95% 50 273 36
90% 50 273 38
70% 50 273 49
50% 59 321 56
40% 59 322 73
30% 59 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 268 21
95% 50 268 40
90% 50 272 39
70% 50 272 50
50% 68 382 35
40% 69 384 46
30% 82 441 47
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 155 76
95% 49 268 44
90% 49 268 46
70% 49 268 56
50% 65 376 40
40% 65 376 54
30% 77 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.