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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UU9
Sequence Clusters for the Sequence Entities in PDB 2UU9
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 189 28
95% 88 190 47
90% 88 190 50
70% 88 190 60
50% 111 271 34
40% 111 271 46
30% 111 276 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 191 26
95% 88 191 43
90% 88 191 45
70% 88 191 56
50% 105 265 41
40% 123 318 35
30% 123 318 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 160 35
95% 88 198 34
90% 88 198 36
70% 105 277 24
50% 105 277 33
40% 105 277 45
30% 105 277 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 192 23
95% 88 192 40
90% 88 192 43
70% 88 192 54
50% 108 270 38
40% 108 270 51
30% 124 319 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 190 27
95% 88 190 48
90% 88 190 51
70% 88 190 61
50% 88 190 94
40% 88 190 119
30% 88 190 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 194 21
95% 92 199 33
90% 92 199 35
70% 92 199 47
50% 112 278 32
40% 112 278 43
30% 112 278 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 186 29
95% 88 191 45
90% 88 191 48
70% 88 191 58
50% 88 191 92
40% 88 191 117
30% 108 268 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 106 56
95% 87 185 49
90% 88 189 52
70% 88 189 62
50% 88 189 95
40% 88 189 120
30% 88 189 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 119 50
95% 82 168 61
90% 82 168 64
70% 82 168 80
50% 82 168 117
40% 82 168 140
30% 82 168 163
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 170 37
95% 82 170 59
90% 82 170 63
70% 82 170 78
50% 106 268 37
40% 106 268 50
30% 106 268 74
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 191 24
95% 88 192 37
90% 88 192 41
70% 88 192 52
50% 88 192 91
40% 105 265 54
30% 105 265 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 142 42
95% 88 190 46
90% 88 190 49
70% 88 190 59
50% 88 190 93
40% 88 190 118
30% 88 190 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 181 34
95% 88 181 53
90% 88 181 55
70% 88 181 69
50% 88 181 105
40% 88 181 132
30% 88 181 151
Entity #22: Chains: X - RNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 167 38
95% 81 167 63
90% 81 167 66
70% 81 167 82
50% 85 206 77
40% 85 206 101
30% 85 206 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 184 30
95% 88 192 38
90% 88 192 42
70% 88 192 53
50% 105 265 39
40% 105 266 52
30% 105 266 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 191 25
95% 88 191 42
90% 88 191 44
70% 88 191 55
50% 106 269 36
40% 106 269 49
30% 106 271 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 196 19
95% 96 202 30
90% 96 202 31
70% 96 202 45
50% 96 202 84
40% 96 202 108
30% 111 239 93
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 195 20
95% 89 196 36
90% 89 196 38
70% 89 196 49
50% 106 237 56
40% 106 238 74
30% 106 238 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 191 22
95% 88 191 39
90% 89 195 39
70% 89 195 50
50% 108 271 35
40% 109 273 47
30% 126 323 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 102 77
95% 88 191 44
90% 88 191 46
70% 88 191 57
50% 105 265 40
40% 105 265 55
30% 121 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.