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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UU9
Sequence Clusters for the Sequence Entities in PDB 2UU9
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 218 36
95% 106 219 51
90% 106 219 55
70% 106 219 67
50% 130 306 33
40% 130 306 43
30% 146 360 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 220 34
95% 106 220 47
90% 106 220 51
70% 106 220 62
50% 124 300 42
40% 142 361 30
30% 142 362 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 183 46
95% 106 227 38
90% 106 227 42
70% 124 311 23
50% 124 312 32
40% 124 312 42
30% 124 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 221 32
95% 106 221 45
90% 106 221 49
70% 106 221 60
50% 127 305 38
40% 127 305 50
30% 143 361 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 219 35
95% 106 219 52
90% 106 219 56
70% 106 220 65
50% 106 220 92
40% 106 220 113
30% 106 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 223 29
95% 110 228 26
90% 110 228 31
70% 110 228 43
50% 131 313 29
40% 131 314 40
30% 131 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 215 37
95% 106 220 49
90% 106 220 53
70% 106 220 64
50% 106 220 91
40% 106 221 112
30% 127 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 134 59
95% 105 214 56
90% 106 218 58
70% 106 218 69
50% 106 218 94
40% 106 218 116
30% 106 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 145 55
95% 100 194 64
90% 100 194 66
70% 100 194 79
50% 100 194 111
40% 100 194 130
30% 100 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 223 27
95% 107 223 41
90% 107 223 46
70% 107 223 57
50% 125 303 37
40% 125 303 48
30% 125 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 220 30
95% 106 221 42
90% 106 221 47
70% 106 221 58
50% 124 299 41
40% 124 300 51
30% 124 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 170 49
95% 106 219 50
90% 106 219 54
70% 106 219 66
50% 106 219 93
40% 106 219 114
30% 106 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 210 40
95% 106 210 59
90% 106 210 62
70% 106 210 73
50% 106 210 98
40% 106 210 120
30% 106 210 133
Entity #22: Chains: X - RNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 193 45
95% 99 193 65
90% 99 193 67
70% 99 193 80
50% 103 236 78
40% 103 236 99
30% 103 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 213 38
95% 106 221 43
90% 106 221 48
70% 106 221 59
50% 124 300 39
40% 124 301 49
30% 124 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 220 33
95% 106 220 46
90% 106 220 50
70% 106 220 61
50% 125 304 36
40% 125 304 47
30% 125 306 65
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 225 24
95% 114 231 24
90% 114 231 29
70% 114 231 41
50% 114 231 83
40% 114 231 105
30% 130 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 224 26
95% 107 225 40
90% 107 225 44
70% 107 225 55
50% 125 268 51
40% 125 269 62
30% 125 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 220 31
95% 106 220 44
90% 107 224 45
70% 107 224 56
50% 127 306 34
40% 128 308 44
30% 145 365 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 130 75
95% 106 220 48
90% 106 220 52
70% 106 220 63
50% 124 300 43
40% 124 300 52
30% 140 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.