POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Sequence Clustering and Redundancy Reduction Results
2UU9
Sequence Clusters for the Sequence Entities in PDB 2UU9
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 197 29
95% 94 198 45
90% 94 198 47
70% 94 198 59
50% 118 282 35
40% 118 282 45
30% 134 333 45
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 199 25
95% 94 199 40
90% 94 199 42
70% 94 199 54
50% 112 276 42
40% 130 332 35
30% 130 332 46
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 166 36
95% 94 206 31
90% 94 206 33
70% 112 288 24
50% 112 288 34
40% 112 288 44
30% 112 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 200 22
95% 94 200 38
90% 94 200 40
70% 94 200 51
50% 115 281 39
40% 115 281 50
30% 131 333 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 198 26
95% 94 198 46
90% 94 198 48
70% 94 198 60
50% 94 198 92
40% 94 198 114
30% 94 198 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 202 20
95% 98 207 30
90% 98 207 32
70% 98 207 43
50% 119 289 33
40% 119 289 43
30% 119 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 194 30
95% 94 199 42
90% 94 199 44
70% 94 199 56
50% 94 199 89
40% 94 199 112
30% 115 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 113 66
95% 93 193 50
90% 94 197 49
70% 94 197 61
50% 94 197 93
40% 94 197 116
30% 94 197 138
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 125 59
95% 88 174 71
90% 88 174 75
70% 88 174 88
50% 88 174 128
40% 88 174 146
30% 88 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 202 19
95% 95 202 33
90% 95 202 36
70% 95 202 47
50% 113 279 38
40% 113 279 49
30% 113 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 199 23
95% 94 200 35
90% 94 200 38
70% 94 200 48
50% 94 200 88
40% 112 276 53
30% 112 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 149 54
95% 94 198 44
90% 94 198 46
70% 94 198 58
50% 94 198 91
40% 94 198 113
30% 94 198 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 189 32
95% 94 189 52
90% 94 189 55
70% 94 189 67
50% 94 189 111
40% 94 189 134
30% 94 189 153
Entity #22: Chains: X - RNA rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Y - RNA rna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 173 48
95% 87 173 72
90% 87 173 76
70% 87 173 90
50% 91 214 76
40% 91 214 102
30% 91 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 192 31
95% 94 200 36
90% 94 200 39
70% 94 200 49
50% 112 276 40
40% 112 277 51
30% 112 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 199 24
95% 94 199 39
90% 94 199 41
70% 94 199 52
50% 113 280 37
40% 113 280 48
30% 113 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 204 17
95% 102 210 29
90% 102 210 31
70% 102 210 42
50% 102 210 82
40% 102 210 107
30% 118 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 203 18
95% 95 204 32
90% 95 204 34
70% 95 204 44
50% 113 246 53
40% 113 247 70
30% 113 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 199 21
95% 94 199 37
90% 95 203 35
70% 95 203 45
50% 115 282 36
40% 116 284 46
30% 133 337 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 109 86
95% 94 199 41
90% 94 199 43
70% 94 199 55
50% 112 276 41
40% 112 276 54
30% 128 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.