Sequence Similarity Clusters for the Entities in PDB 2UBP

Entity #1 | Chains: A
PROTEIN (UREASE GAMMA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7649
95 % 11 13 5345 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5364
70 % 16 44 1280
50 % 16 46 1091
40 % 16 46 1100
30 % 16 46 1081
Entity #2 | Chains: B
PROTEIN (UREASE BETA SUBUNIT) protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 4521
95 % 11 13 5324 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5345
70 % 11 13 5247
50 % 11 13 5016
40 % 11 13 4746
30 % 11 13 4338
Entity #3 | Chains: C
PROTEIN (UREASE ALPHA SUBUNIT) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 7897
95 % 11 13 5114 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 11 13 5127
70 % 11 13 5007
50 % 16 49 935
40 % 16 49 965
30 % 16 49 944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures