Sequence Similarity Clusters for the Entities in PDB 2UBP

Entity #1 | Chains: A
PROTEIN (UREASE GAMMA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7297
95 % 11 13 5059 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5071
70 % 16 44 1228
50 % 16 46 1044
40 % 16 46 1055
30 % 16 46 1034
Entity #2 | Chains: B
PROTEIN (UREASE BETA SUBUNIT) protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 4259
95 % 11 13 5039 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5055
70 % 11 13 4993
50 % 11 13 4786
40 % 11 13 4532
30 % 11 13 4150
Entity #3 | Chains: C
PROTEIN (UREASE ALPHA SUBUNIT) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 7536
95 % 11 13 4839 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 11 13 4850
70 % 11 13 4766
50 % 16 49 902
40 % 16 49 928
30 % 16 49 909

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.