Sequence Similarity Clusters for the Entities in PDB 2UBP

Entity #1 | Chains: A
PROTEIN (UREASE GAMMA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 7396
95 % 11 13 5163 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5180
70 % 16 44 1242
50 % 16 46 1060
40 % 16 46 1067
30 % 16 46 1045
Entity #2 | Chains: B
PROTEIN (UREASE BETA SUBUNIT) protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 4350
95 % 11 13 5142 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 11 13 5163
70 % 11 13 5085
50 % 11 13 4865
40 % 11 13 4607
30 % 11 13 4219
Entity #3 | Chains: C
PROTEIN (UREASE ALPHA SUBUNIT) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 7632
95 % 11 13 4935 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 11 13 4949
70 % 11 13 4847
50 % 16 49 914
40 % 16 49 938
30 % 16 49 915

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.