Sequence Similarity Clusters for the Entities in PDB 2R4S

Entity #1 | Chains: A
Beta-2 adrenergic receptor protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41538
95 % 2 3 25654 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 4 16643
70 % 10 15 4866
50 % 112 144 267
40 % 123 156 274
30 % 123 158 285
Entity #2 | Chains: L
antibody for beta2 adrenoceptor, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29318
95 % 3 4 17623 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.3
PDBFlex
90 % 26 27 2238
70 % 2264 2637 1
50 % 4611 5362 1
40 % 5178 6051 1
30 % 6444 7514 1
Entity #3 | Chains: H
antibody for beta2 adrenoceptor, heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29319
95 % 2 3 25655 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 24753
70 % 2235 2600 2
50 % 4612 5362 1
40 % 5179 6051 1
30 % 6445 7514 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures