Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17000
95 % 2 2 15212
90 % 9 12 2472
70 % 91 122 167
50 % 91 122 198
40 % 91 122 214
30 % 91 125 226
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 734
95 % 26 39 855
90 % 26 39 889
70 % 26 39 930
50 % 26 39 979
40 % 26 39 994
30 % 26 39 986
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19021
95 % 2 2 16596
90 % 483 585 3
70 % 1370 1648 3
50 % 3311 4012 1
40 % 3313 4014 1
30 % 3919 4750 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18548
95 % 2 2 16256
90 % 2 2 15932
70 % 1603 1945 1
50 % 3312 4012 1
40 % 3314 4014 1
30 % 3920 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.