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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 13810
95% 2 2 12577
90% 9 9 3115
70% 24 27 1154
50% 24 27 1216
40% 24 27 1250
30% 24 29 1149
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 27 953
95% 26 32 1027
90% 26 32 1049
70% 26 32 1080
50% 26 32 1145
40% 26 32 1178
30% 26 32 1163
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15515
95% 2 2 13738
90% 307 360 4
70% 1089 1274 3
50% 2586 3031 1
40% 2587 3032 1
30% 3038 3590 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15123
95% 2 2 13451
90% 2 2 13208
70% 1246 1461 2
50% 2587 3031 1
40% 2588 3032 1
30% 3039 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.