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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14629
95% 2 2 13217
90% 9 10 3107
70% 24 29 1090
50% 24 29 1149
40% 24 29 1176
30% 24 31 1074
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 850
95% 26 35 954
90% 26 35 973
70% 26 35 1005
50% 26 35 1046
40% 26 35 1076
30% 26 35 1055
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16422
95% 2 2 14437
90% 327 389 4
70% 1147 1349 3
50% 2723 3210 1
40% 2724 3211 1
30% 3197 3793 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16010
95% 2 2 14137
90% 2 2 13871
70% 1312 1548 2
50% 2724 3210 1
40% 2725 3211 1
30% 3198 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.