Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 15935
95 % 2 2 14331
90 % 9 12 2303
70 % 24 31 1013
50 % 24 31 1063
40 % 24 31 1088
30 % 83 111 242
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 685
95 % 26 39 759
90 % 26 39 798
70 % 26 39 845
50 % 26 39 909
40 % 26 39 933
30 % 26 39 927
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17875
95 % 2 2 15672
90 % 381 461 4
70 % 1280 1526 3
50 % 3086 3692 1
40 % 3087 3693 1
30 % 3625 4355 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17417
95 % 2 2 15340
90 % 2 2 15025
70 % 1495 1790 1
50 % 3087 3692 1
40 % 3088 3693 1
30 % 3626 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.