Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17547
95 % 2 2 15673
90 % 9 12 2614
70 % 94 125 171
50 % 94 125 206
40 % 94 125 230
30 % 94 128 232
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 35 708
95 % 26 40 843
90 % 26 40 878
70 % 26 40 911
50 % 26 40 951
40 % 26 40 974
30 % 26 40 957
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19634
95 % 2 2 17102
90 % 515 624 3
70 % 1439 1729 2
50 % 3480 4220 1
40 % 3481 4221 1
30 % 4098 4972 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19145
95 % 2 2 16753
90 % 2 2 16418
70 % 1681 2041 1
50 % 3481 4220 1
40 % 3482 4221 1
30 % 4099 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.