Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16864
95 % 2 2 15108
90 % 9 12 2458
70 % 91 121 167
50 % 91 121 199
40 % 91 121 218
30 % 91 124 223
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 731
95 % 26 39 854
90 % 26 39 886
70 % 26 39 926
50 % 26 39 973
40 % 26 39 988
30 % 26 39 983
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18880
95 % 2 2 16488
90 % 482 582 3
70 % 1366 1642 3
50 % 3302 3997 1
40 % 3303 3998 1
30 % 3903 4727 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18407
95 % 2 2 16148
90 % 2 2 15822
70 % 1599 1938 1
50 % 3303 3997 1
40 % 3304 3998 1
30 % 3904 4727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.