POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14818
95% 2 2 13366
90% 9 10 3145
70% 24 29 1108
50% 24 29 1165
40% 24 29 1191
30% 24 31 1087
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 862
95% 26 35 977
90% 26 35 997
70% 26 35 1025
50% 26 35 1064
40% 26 35 1090
30% 26 35 1067
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16636
95% 2 2 14607
90% 345 413 4
70% 1172 1388 3
50% 2780 3295 1
40% 2781 3296 1
30% 3263 3893 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16219
95% 2 2 14303
90% 2 2 14038
70% 1340 1590 2
50% 2781 3295 1
40% 2782 3296 1
30% 3264 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.