Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16717
95 % 2 2 14984
90 % 9 12 2426
70 % 91 121 166
50 % 91 121 198
40 % 91 121 214
30 % 91 124 223
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 727
95 % 26 39 843
90 % 26 39 877
70 % 26 39 918
50 % 26 39 961
40 % 26 39 981
30 % 26 39 976
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18723
95 % 2 2 16363
90 % 417 505 3
70 % 1353 1620 3
50 % 3266 3940 1
40 % 3267 3941 1
30 % 3866 4669 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18253
95 % 2 2 16025
90 % 2 2 15700
70 % 1583 1912 1
50 % 3267 3940 1
40 % 3268 3941 1
30 % 3867 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.