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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 13882
95% 2 2 12640
90% 9 9 3126
70% 24 27 1155
50% 24 27 1218
40% 24 27 1253
30% 24 29 1153
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 28 921
95% 26 33 979
90% 26 33 1003
70% 26 33 1034
50% 26 33 1102
40% 26 33 1131
30% 26 33 1120
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15593
95% 2 2 13805
90% 309 365 4
70% 1102 1291 3
50% 2617 3070 1
40% 2618 3071 1
30% 3069 3629 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15199
95% 2 2 13517
90% 2 2 13272
70% 1261 1480 2
50% 2618 3070 1
40% 2619 3071 1
30% 3070 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.