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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14916
95% 2 2 13453
90% 9 10 3166
70% 24 29 1112
50% 24 29 1172
40% 24 29 1197
30% 24 31 1093
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 865
95% 26 35 982
90% 26 35 1003
70% 26 35 1034
50% 26 35 1076
40% 26 35 1096
30% 26 35 1073
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16747
95% 2 2 14703
90% 345 414 4
70% 1184 1404 3
50% 2814 3339 1
40% 2815 3340 1
30% 3313 3953 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16323
95% 2 2 14395
90% 2 2 14131
70% 1359 1614 2
50% 2815 3339 1
40% 2816 3340 1
30% 3314 3953 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.