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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14687
95% 2 2 13260
90% 9 10 3123
70% 24 29 1096
50% 24 29 1156
40% 24 29 1181
30% 24 31 1076
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 851
95% 26 35 961
90% 26 35 981
70% 26 35 1011
50% 26 35 1053
40% 26 35 1080
30% 26 35 1057
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16492
95% 2 2 14491
90% 327 389 5
70% 1155 1358 3
50% 2747 3236 1
40% 2748 3237 1
30% 3221 3821 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16079
95% 2 2 14190
90% 2 2 13923
70% 1324 1561 2
50% 2748 3236 1
40% 2749 3237 1
30% 3222 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.