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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14023
95% 2 2 12765
90% 9 9 3214
70% 24 28 1051
50% 24 28 1138
40% 24 28 1159
30% 24 30 1080
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 29 816
95% 26 34 893
90% 26 34 915
70% 26 34 954
50% 26 34 1033
40% 26 34 1066
30% 26 34 1043
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15760
95% 2 2 13944
90% 312 368 4
70% 1107 1297 3
50% 2633 3090 1
40% 2634 3091 1
30% 3087 3653 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15363
95% 2 2 13655
90% 2 2 13403
70% 1269 1490 2
50% 2634 3090 1
40% 2635 3091 1
30% 3088 3653 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.