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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15104
95% 2 2 13614
90% 9 10 3202
70% 24 29 1119
50% 24 29 1187
40% 24 29 1214
30% 24 31 1105
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 876
95% 26 35 993
90% 26 35 1014
70% 26 35 1043
50% 26 35 1088
40% 26 35 1112
30% 26 35 1085
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16961
95% 2 2 14893
90% 354 425 4
70% 1208 1434 3
50% 2881 3425 1
40% 2882 3426 1
30% 3384 4043 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16531
95% 2 2 14580
90% 2 2 14303
70% 1392 1656 1
50% 2882 3425 1
40% 2883 3426 1
30% 3385 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.