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Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14369
95% 2 2 13050
90% 9 10 3049
70% 24 29 1075
50% 24 29 1140
40% 24 29 1161
30% 24 31 1061
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 30 835
95% 26 35 936
90% 26 35 956
70% 26 35 991
50% 26 35 1037
40% 26 35 1062
30% 26 35 1040
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16149
95% 2 2 14259
90% 318 377 5
70% 1135 1332 3
50% 2693 3170 1
40% 2694 3171 1
30% 3167 3753 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15742
95% 2 2 13962
90% 2 2 13703
70% 1297 1528 2
50% 2694 3170 1
40% 2695 3171 1
30% 3168 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.