Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16332
95 % 2 2 14660
90 % 9 12 2359
70 % 91 120 165
50 % 91 120 196
40 % 91 120 211
30 % 91 123 222
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 702
95 % 26 39 783
90 % 26 39 819
70 % 26 39 865
50 % 26 39 930
40 % 26 39 956
30 % 26 39 951
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18308
95 % 2 2 16027
90 % 391 476 4
70 % 1309 1568 3
50 % 3163 3813 1
40 % 3164 3814 1
30 % 3760 4537 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17841
95 % 2 2 15691
90 % 2 2 15375
70 % 1533 1850 1
50 % 3164 3813 1
40 % 3165 3814 1
30 % 3761 4537 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.