POP-OUT | CLOSE

An Information Portal to 111749 Biological Macromolecular Structures

Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4
Sequence Clustering and Redundancy Reduction Results
2QAD
Sequence Clusters for the Sequence Entities in PDB 2QAD
Entity #1: Chains: A,E - Envelope glycoprotein gp160 protein, length: 322 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15292
95% 2 2 13796
90% 9 12 2211
70% 24 31 975
50% 24 31 1024
40% 24 31 1047
30% 24 33 980
Entity #2: Chains: B,F - T-cell surface glycoprotein CD4 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 33 684
95% 26 38 736
90% 26 38 777
70% 26 38 821
50% 26 38 894
40% 26 38 925
30% 26 38 915
Entity #3: Chains: C,G - anti-HIV-1 antibody 412d light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 17168
95% 2 2 15086
90% 357 433 4
70% 1219 1454 3
50% 2913 3477 1
40% 2914 3478 1
30% 3422 4103 1
Entity #4: Chains: D,H - anti-HIV-1 antibody 412d heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 16732
95% 2 2 14772
90% 2 2 14475
70% 1408 1682 1
50% 2914 3477 1
40% 2915 3478 1
30% 3423 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.