Sequence Similarity Clusters for the Entities in PDB 2QAD

Entity #1 | Chains: A,E
Envelope glycoprotein gp160 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17825
95 % 2 2 15911
90 % 9 12 2667
70 % 95 126 174
50 % 95 126 213
40 % 95 126 235
30 % 95 129 238
Entity #2 | Chains: B,F
T-cell surface glycoprotein CD4 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 35 738
95 % 26 40 889
90 % 26 40 921
70 % 26 40 946
50 % 26 40 979
40 % 26 40 998
30 % 26 40 977
Entity #3 | Chains: C,G
anti-HIV-1 antibody 412d light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19953
95 % 2 2 17362
90 % 526 640 3
70 % 1468 1765 2
50 % 3580 4337 1
40 % 3580 4337 1
30 % 4218 5109 1
Entity #4 | Chains: D,H
anti-HIV-1 antibody 412d heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19451
95 % 2 2 17006
90 % 2 2 16661
70 % 1728 2096 1
50 % 3581 4337 1
40 % 3581 4337 1
30 % 4219 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.