POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 586
95% 46 47 851
90% 46 47 885
70% 46 47 916
50% 66 74 532
40% 66 79 517
30% 66 79 527
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 717
95% 42 42 998
90% 42 42 1018
70% 42 42 1046
50% 42 43 1065
40% 42 43 1089
30% 42 57 813
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 292
95% 66 74 421
90% 66 74 448
70% 66 74 482
50% 66 74 536
40% 67 77 538
30% 67 78 536
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1522
95% 66 68 483
90% 66 68 506
70% 66 68 546
50% 83 123 238
40% 83 123 267
30% 153 360 46
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 291
95% 66 74 420
90% 66 74 447
70% 66 74 480
50% 66 74 534
40% 66 74 576
30% 152 352 50
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1485
95% 46 47 848
90% 46 47 882
70% 66 68 539
50% 83 121 245
40% 83 121 272
30% 83 121 289
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 289
95% 66 74 418
90% 66 74 445
70% 66 74 477
50% 66 76 507
40% 66 76 552
30% 66 78 535
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 329
95% 66 68 485
90% 66 68 509
70% 66 68 549
50% 66 70 595
40% 66 70 632
30% 66 70 632
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 591
95% 66 68 481
90% 66 68 504
70% 66 68 544
50% 66 68 626
40% 66 70 631
30% 66 71 611
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 330
95% 66 68 486
90% 66 68 510
70% 66 68 551
50% 66 70 597
40% 66 70 635
30% 66 71 612
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 339
95% 66 68 479
90% 66 68 502
70% 66 68 542
50% 66 68 623
40% 66 68 656
30% 83 124 276
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 298
95% 66 74 424
90% 66 74 451
70% 66 74 485
50% 66 76 510
40% 66 78 528
30% 135 309 61
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 294
95% 66 74 422
90% 66 74 449
70% 66 74 483
50% 83 130 223
40% 83 130 248
30% 83 130 262
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 317
95% 62 70 463
90% 62 70 485
70% 62 70 520
50% 62 70 598
40% 62 70 636
30% 62 70 634
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 300
95% 66 74 425
90% 66 74 452
70% 66 74 486
50% 66 74 541
40% 66 74 582
30% 66 74 577
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 327
95% 66 68 480
90% 66 68 503
70% 66 68 543
50% 66 68 624
40% 66 70 630
30% 66 71 610
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 332
95% 66 68 488
90% 66 68 512
70% 66 68 553
50% 66 68 629
40% 66 68 660
30% 66 68 657
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 363
95% 61 63 536
90% 61 63 563
70% 61 63 616
50% 61 63 693
40% 61 63 721
30% 61 63 727
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1974
95% 22 23 2099
90% 22 23 2132
70% 22 23 2141
50% 22 23 2152
40% 22 23 2157
30% 66 102 336
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 334
95% 66 68 490
90% 66 68 514
70% 66 68 555
50% 66 69 615
40% 66 69 650
30% 66 69 647
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 582
95% 66 68 475
90% 66 68 498
70% 66 68 536
50% 83 121 244
40% 83 123 266
30% 83 123 283
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 598
95% 66 68 491
90% 66 68 515
70% 66 68 556
50% 83 123 239
40% 83 123 268
30% 83 123 284
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 331
95% 66 68 487
90% 66 68 511
70% 66 68 552
50% 66 68 628
40% 66 68 659
30% 83 122 288
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 336
95% 66 74 411
90% 66 74 438
70% 66 74 473
50% 66 74 525
40% 83 127 255
30% 83 127 269
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 672
95% 66 74 415
90% 66 74 442
70% 66 74 476
50% 66 74 527
40% 66 76 547
30% 66 77 541
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 290
95% 66 74 419
90% 66 74 446
70% 66 74 478
50% 66 74 531
40% 83 128 251
30% 83 128 266
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 326
95% 66 68 478
90% 66 68 501
70% 66 68 541
50% 66 68 622
40% 83 122 270
30% 153 355 49
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 593
95% 46 47 858
90% 66 68 508
70% 66 68 548
50% 86 95 319
40% 95 105 298
30% 95 107 309
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 665
95% 63 64 521
90% 63 64 546
70% 63 64 594
50% 63 64 675
40% 63 64 701
30% 63 65 700
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.