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A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 555
95% 46 47 808
90% 46 47 842
70% 46 47 876
50% 66 74 507
40% 66 78 503
30% 66 78 513
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 685
95% 42 42 950
90% 42 42 968
70% 42 42 1001
50% 42 43 1022
40% 42 43 1047
30% 42 56 791
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 288
95% 66 74 411
90% 66 74 434
70% 66 74 465
50% 66 74 509
40% 67 77 515
30% 67 78 515
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1466
95% 66 68 467
90% 66 68 488
70% 66 68 525
50% 83 118 239
40% 83 118 265
30% 138 325 48
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 287
95% 66 74 410
90% 66 74 433
70% 66 74 463
50% 66 74 508
40% 66 74 547
30% 137 317 53
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1432
95% 46 47 806
90% 46 47 840
70% 66 68 518
50% 83 116 246
40% 83 116 273
30% 83 116 294
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 285
95% 66 74 408
90% 66 74 431
70% 66 74 461
50% 66 76 488
40% 66 76 526
30% 66 78 512
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 322
95% 66 68 469
90% 66 68 491
70% 66 68 528
50% 66 70 555
40% 66 70 591
30% 66 70 590
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 560
95% 66 68 465
90% 66 68 486
70% 66 68 523
50% 66 68 589
40% 66 70 590
30% 66 71 571
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 325
95% 66 68 471
90% 66 68 493
70% 66 68 530
50% 66 70 558
40% 66 70 595
30% 66 71 573
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 334
95% 66 68 463
90% 66 68 484
70% 66 68 521
50% 66 68 586
40% 66 68 619
30% 83 119 283
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 291
95% 66 74 413
90% 66 74 436
70% 66 74 467
50% 66 76 490
40% 66 78 507
30% 120 279 70
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 290
95% 66 74 412
90% 66 74 435
70% 66 74 466
50% 83 125 225
40% 83 125 250
30% 83 125 265
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 311
95% 62 70 448
90% 62 70 468
70% 62 70 503
50% 62 70 559
40% 62 70 596
30% 62 70 592
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 292
95% 66 74 414
90% 66 74 437
70% 66 74 468
50% 66 74 510
40% 66 74 550
30% 66 74 546
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 320
95% 66 68 464
90% 66 68 485
70% 66 68 522
50% 66 68 587
40% 66 70 589
30% 66 71 568
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 327
95% 66 68 473
90% 66 68 495
70% 66 68 532
50% 66 68 594
40% 66 68 625
30% 66 68 618
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 351
95% 61 63 516
90% 61 63 543
70% 61 63 584
50% 61 63 660
40% 61 63 687
30% 61 63 687
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1889
95% 22 23 2022
90% 22 23 2053
70% 22 23 2065
50% 22 23 2080
40% 22 23 2097
30% 66 97 336
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 329
95% 66 68 475
90% 66 68 497
70% 66 68 534
50% 66 69 576
40% 66 69 613
30% 66 69 608
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 46 573
95% 65 67 479
90% 65 67 501
70% 65 67 541
50% 82 115 249
40% 82 117 268
30% 82 117 287
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 568
95% 66 68 476
90% 66 68 498
70% 66 68 535
50% 83 118 240
40% 83 118 266
30% 83 118 286
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 326
95% 66 68 472
90% 66 68 494
70% 66 68 531
50% 66 68 593
40% 66 68 624
30% 83 117 290
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 331
95% 66 74 403
90% 66 74 426
70% 66 74 457
50% 66 74 502
40% 83 122 257
30% 83 122 274
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 642
95% 66 74 406
90% 66 74 429
70% 66 74 460
50% 66 74 504
40% 66 76 523
30% 66 77 519
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 286
95% 66 74 409
90% 66 74 432
70% 66 74 462
50% 66 74 506
40% 83 122 260
30% 83 122 276
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 319
95% 66 68 462
90% 66 68 483
70% 66 68 520
50% 66 68 585
40% 83 117 270
30% 138 320 51
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 562
95% 46 47 815
90% 66 68 490
70% 66 68 527
50% 86 95 303
40% 95 105 290
30% 95 107 307
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 632
95% 63 64 502
90% 63 64 527
70% 63 64 566
50% 63 64 641
40% 63 64 670
30% 63 65 663
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.