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A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 575
95% 46 47 828
90% 46 47 860
70% 46 47 893
50% 66 74 514
40% 66 79 503
30% 66 79 511
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 700
95% 42 42 973
90% 42 42 992
70% 42 42 1022
50% 42 43 1039
40% 42 43 1064
30% 42 56 804
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 289
95% 66 74 416
90% 66 74 441
70% 66 74 471
50% 66 74 519
40% 67 77 524
30% 67 78 520
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1498
95% 66 68 474
90% 66 68 496
70% 66 68 536
50% 83 121 240
40% 83 121 265
30% 141 335 48
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 288
95% 66 74 415
90% 66 74 440
70% 66 74 470
50% 66 74 515
40% 66 74 557
30% 140 327 52
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1461
95% 46 47 826
90% 46 47 858
70% 66 68 528
50% 83 119 245
40% 83 119 271
30% 83 119 288
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 286
95% 66 74 413
90% 66 74 438
70% 66 74 467
50% 66 76 494
40% 66 76 533
30% 66 78 518
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 325
95% 66 68 476
90% 66 68 499
70% 66 68 539
50% 66 70 574
40% 66 70 609
30% 66 70 609
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 580
95% 66 68 472
90% 66 68 494
70% 66 68 534
50% 66 68 608
40% 66 70 607
30% 66 71 589
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 327
95% 66 68 478
90% 66 68 501
70% 66 68 541
50% 66 70 578
40% 66 70 614
30% 66 71 592
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 336
95% 66 68 470
90% 66 68 492
70% 66 68 532
50% 66 68 605
40% 66 68 641
30% 83 122 279
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 292
95% 66 74 418
90% 66 74 443
70% 66 74 474
50% 66 76 495
40% 66 78 515
30% 123 286 71
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 291
95% 66 74 417
90% 66 74 442
70% 66 74 473
50% 83 128 220
40% 83 128 247
30% 83 128 261
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 313
95% 62 70 455
90% 62 70 475
70% 62 70 511
50% 62 70 579
40% 62 70 615
30% 62 70 612
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 293
95% 66 74 419
90% 66 74 444
70% 66 74 475
50% 66 74 520
40% 66 74 560
30% 66 74 555
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 323
95% 66 68 471
90% 66 68 493
70% 66 68 533
50% 66 68 606
40% 66 70 606
30% 66 71 588
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 329
95% 66 68 480
90% 66 68 503
70% 66 68 543
50% 66 68 612
40% 66 68 646
30% 66 68 640
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 354
95% 61 63 523
90% 61 63 553
70% 61 63 600
50% 61 63 673
40% 61 63 702
30% 61 63 703
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1930
95% 22 23 2059
90% 22 23 2088
70% 22 23 2098
50% 22 23 2110
40% 22 23 2124
30% 66 100 336
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 331
95% 66 68 482
90% 66 68 505
70% 66 68 545
50% 66 69 596
40% 66 69 631
30% 66 69 627
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 571
95% 66 68 467
90% 66 68 489
70% 66 68 527
50% 83 119 244
40% 83 121 264
30% 83 121 281
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 587
95% 66 68 483
90% 66 68 506
70% 66 68 546
50% 83 121 241
40% 83 121 266
30% 83 121 283
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 328
95% 66 68 479
90% 66 68 502
70% 66 68 542
50% 66 68 611
40% 66 68 645
30% 83 120 287
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 333
95% 66 74 407
90% 66 74 432
70% 66 74 463
50% 66 74 509
40% 83 125 253
30% 83 125 271
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 660
95% 66 74 411
90% 66 74 436
70% 66 74 466
50% 66 74 511
40% 66 76 531
30% 66 77 526
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 287
95% 66 74 414
90% 66 74 439
70% 66 74 468
50% 66 74 513
40% 83 126 252
30% 83 126 269
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 322
95% 66 68 469
90% 66 68 491
70% 66 68 531
50% 66 68 604
40% 83 120 268
30% 141 330 51
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 582
95% 46 47 834
90% 66 68 498
70% 66 68 538
50% 86 95 310
40% 95 105 292
30% 95 107 308
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 652
95% 63 64 508
90% 63 64 536
70% 63 64 581
50% 63 64 652
40% 63 64 685
30% 63 65 678
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.