POP-OUT | CLOSE

An Information Portal to 106082 Biological Macromolecular Structures

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 541
95% 46 47 794
90% 46 47 827
70% 46 47 865
50% 66 74 506
40% 66 78 500
30% 66 78 512
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 676
95% 42 42 941
90% 42 42 960
70% 42 42 995
50% 42 43 1014
40% 42 43 1041
30% 42 56 786
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 288
95% 66 74 409
90% 66 74 433
70% 66 74 463
50% 66 74 508
40% 67 77 511
30% 67 78 513
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1450
95% 66 68 463
90% 66 68 486
70% 66 68 522
50% 83 118 235
40% 83 118 264
30% 138 324 46
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 287
95% 66 74 408
90% 66 74 432
70% 66 74 462
50% 66 74 507
40% 66 74 544
30% 137 316 51
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1417
95% 46 47 792
90% 46 47 825
70% 66 68 515
50% 83 116 241
40% 83 116 272
30% 83 116 293
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 285
95% 66 74 406
90% 66 74 430
70% 66 74 460
50% 66 76 486
40% 66 76 520
30% 66 78 511
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 321
95% 66 68 465
90% 66 68 489
70% 66 68 525
50% 66 70 549
40% 66 70 583
30% 66 70 582
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 544
95% 66 68 461
90% 66 68 484
70% 66 68 520
50% 66 68 584
40% 66 70 582
30% 66 71 563
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 324
95% 66 68 467
90% 66 68 491
70% 66 68 527
50% 66 70 552
40% 66 70 587
30% 66 71 565
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 333
95% 66 68 459
90% 66 68 482
70% 66 68 518
50% 66 68 581
40% 66 68 614
30% 83 119 280
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 291
95% 66 74 411
90% 66 74 435
70% 66 74 466
50% 66 76 488
40% 66 78 503
30% 120 278 69
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 290
95% 66 74 410
90% 66 74 434
70% 66 74 465
50% 83 125 220
40% 83 125 248
30% 83 125 264
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 309
95% 62 70 445
90% 62 70 465
70% 62 70 500
50% 62 70 553
40% 62 70 588
30% 62 70 584
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 292
95% 66 74 412
90% 66 74 436
70% 66 74 467
50% 66 74 510
40% 66 74 546
30% 66 74 542
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 319
95% 66 68 460
90% 66 68 483
70% 66 68 519
50% 66 68 582
40% 66 70 581
30% 66 71 562
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 326
95% 66 68 469
90% 66 68 493
70% 66 68 529
50% 66 68 589
40% 66 68 621
30% 66 68 614
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 350
95% 61 63 512
90% 61 63 538
70% 61 63 579
50% 61 63 655
40% 61 63 682
30% 61 63 681
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1874
95% 22 23 2007
90% 22 23 2039
70% 22 23 2052
50% 22 23 2068
40% 22 23 2087
30% 66 97 334
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 328
95% 66 68 471
90% 66 68 495
70% 66 68 531
50% 66 69 568
40% 66 69 606
30% 66 69 601
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 46 559
95% 65 67 475
90% 65 67 499
70% 65 67 537
50% 82 115 244
40% 82 117 267
30% 82 117 286
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 554
95% 66 68 472
90% 66 68 496
70% 66 68 532
50% 83 118 236
40% 83 118 265
30% 83 118 285
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 325
95% 66 68 468
90% 66 68 492
70% 66 68 528
50% 66 68 588
40% 66 68 620
30% 83 117 289
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 330
95% 66 74 400
90% 66 74 424
70% 66 74 455
50% 66 74 501
40% 83 122 253
30% 83 122 272
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 629
95% 66 74 404
90% 66 74 428
70% 66 74 459
50% 66 74 504
40% 66 76 519
30% 66 77 516
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 286
95% 66 74 407
90% 66 74 431
70% 66 74 461
50% 66 74 505
40% 83 122 256
30% 83 122 274
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 318
95% 66 68 458
90% 66 68 481
70% 66 68 517
50% 66 68 579
40% 83 117 269
30% 138 319 48
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 550
95% 46 47 800
90% 66 68 488
70% 66 68 524
50% 86 95 299
40% 95 105 287
30% 95 107 307
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 620
95% 63 64 498
90% 63 64 523
70% 63 64 563
50% 63 64 636
40% 63 64 667
30% 63 65 656
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.