Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 692
95 % 46 47 982
90 % 46 47 1007
70 % 46 47 1051
50 % 66 74 637
40 % 66 79 629
30 % 66 79 641
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 42 807
95 % 42 42 1121
90 % 42 42 1144
70 % 42 42 1188
50 % 44 46 1068
40 % 44 46 1083
30 % 44 70 707
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 323
95 % 66 74 478
90 % 66 74 509
70 % 66 74 554
50 % 66 74 641
40 % 67 77 649
30 % 67 78 651
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1734
95 % 66 68 547
90 % 66 68 577
70 % 66 68 627
50 % 85 146 223
40 % 85 146 249
30 % 187 450 34
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 322
95 % 66 74 477
90 % 66 74 507
70 % 66 74 551
50 % 66 74 638
40 % 66 74 684
30 % 186 439 38
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1688
95 % 46 47 978
90 % 46 47 1002
70 % 66 68 620
50 % 86 142 231
40 % 86 142 260
30 % 86 142 268
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 320
95 % 66 74 475
90 % 66 74 505
70 % 66 74 548
50 % 66 76 619
40 % 66 76 659
30 % 66 78 648
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 367
95 % 66 68 549
90 % 66 68 579
70 % 66 68 630
50 % 66 70 691
40 % 66 70 737
30 % 66 70 740
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 695
95 % 66 68 546
90 % 66 68 575
70 % 66 68 626
50 % 66 68 715
40 % 66 70 734
30 % 66 71 723
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 369
95 % 66 68 551
90 % 66 68 581
70 % 66 68 633
50 % 66 70 692
40 % 66 70 738
30 % 66 71 726
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 380
95 % 66 68 544
90 % 66 68 573
70 % 66 68 624
50 % 66 68 713
40 % 66 68 751
30 % 85 145 262
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 328
95 % 66 74 482
90 % 66 74 513
70 % 66 74 558
50 % 66 76 622
40 % 66 78 637
30 % 167 376 55
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 326
95 % 66 74 480
90 % 66 74 511
70 % 66 74 556
50 % 85 150 218
40 % 85 150 240
30 % 85 150 252
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 70 349
95 % 62 70 521
90 % 62 70 549
70 % 62 70 601
50 % 62 70 693
40 % 62 70 739
30 % 62 70 741
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 329
95 % 66 74 483
90 % 66 74 514
70 % 66 74 559
50 % 66 74 643
40 % 66 74 689
30 % 66 74 692
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 364
95 % 66 68 545
90 % 66 68 574
70 % 66 68 625
50 % 66 68 714
40 % 66 70 732
30 % 66 71 722
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 371
95 % 66 68 553
90 % 66 68 583
70 % 66 68 635
50 % 66 68 719
40 % 66 68 755
30 % 66 68 759
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 63 426
95 % 61 63 631
90 % 61 63 667
70 % 61 63 710
50 % 61 63 779
40 % 61 63 813
30 % 61 63 810
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2264
95 % 22 23 2358
90 % 22 23 2403
70 % 22 23 2404
50 % 22 23 2395
40 % 22 23 2390
30 % 68 122 316
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 372
95 % 66 68 554
90 % 66 68 584
70 % 66 68 636
50 % 66 69 703
40 % 66 69 746
30 % 66 69 752
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 689
95 % 66 68 541
90 % 66 68 569
70 % 66 68 619
50 % 85 141 230
40 % 85 143 253
30 % 85 143 263
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 705
95 % 66 68 556
90 % 66 68 586
70 % 66 68 637
50 % 85 143 226
40 % 85 143 254
30 % 85 143 264
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 370
95 % 66 68 552
90 % 66 68 582
70 % 66 68 634
50 % 66 68 718
40 % 66 68 754
30 % 85 140 274
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 376
95 % 66 74 468
90 % 66 74 498
70 % 66 74 544
50 % 66 74 632
40 % 85 150 238
30 % 85 150 251
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 757
95 % 66 74 471
90 % 66 74 501
70 % 66 74 547
50 % 66 74 634
40 % 66 76 658
30 % 66 77 658
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 321
95 % 66 74 476
90 % 66 74 506
70 % 66 74 549
50 % 66 74 636
40 % 86 151 237
30 % 86 151 250
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 363
95 % 66 68 543
90 % 66 68 572
70 % 66 68 623
50 % 66 68 712
40 % 85 145 251
30 % 187 445 37
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 697
95 % 46 47 984
90 % 66 68 578
70 % 66 68 628
50 % 90 103 297
40 % 99 117 270
30 % 99 119 282
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 751
95 % 63 64 605
90 % 63 64 639
70 % 63 64 685
50 % 63 64 766
40 % 63 64 799
30 % 63 65 787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.