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An Information Portal to 105097 Biological Macromolecular Structures

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 535
95% 46 47 781
90% 46 47 815
70% 46 47 855
50% 66 74 500
40% 66 78 496
30% 66 78 510
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 671
95% 42 42 928
90% 42 42 948
70% 42 42 984
50% 42 43 1007
40% 42 43 1035
30% 42 55 792
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 285
95% 66 74 406
90% 66 74 431
70% 66 74 459
50% 66 74 502
40% 67 77 507
30% 67 78 511
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1432
95% 66 68 459
90% 66 68 483
70% 66 68 517
50% 83 117 234
40% 83 117 264
30% 134 317 47
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 284
95% 66 74 405
90% 66 74 430
70% 66 74 458
50% 66 74 501
40% 66 74 538
30% 133 309 55
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1399
95% 46 47 779
90% 46 47 813
70% 66 68 510
50% 83 115 238
40% 83 115 274
30% 83 115 294
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 282
95% 66 74 403
90% 66 74 428
70% 66 74 456
50% 66 76 482
40% 66 76 516
30% 66 78 508
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 321
95% 66 68 461
90% 66 68 486
70% 66 68 520
50% 66 70 545
40% 66 70 578
30% 66 70 579
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 537
95% 66 68 457
90% 66 68 481
70% 66 68 515
50% 66 68 574
40% 66 70 577
30% 66 71 560
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 324
95% 66 68 463
90% 66 68 488
70% 66 68 522
50% 66 70 548
40% 66 70 582
30% 66 71 563
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 333
95% 66 68 455
90% 66 68 479
70% 66 68 513
50% 66 68 571
40% 66 68 609
30% 83 118 281
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 288
95% 66 74 408
90% 66 74 433
70% 66 74 462
50% 66 76 484
40% 66 78 499
30% 116 272 70
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 287
95% 66 74 407
90% 66 74 432
70% 66 74 461
50% 83 124 220
40% 83 124 247
30% 83 124 265
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 307
95% 62 70 440
90% 62 70 462
70% 62 70 496
50% 62 70 549
40% 62 70 583
30% 62 70 581
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 289
95% 66 74 409
90% 66 74 434
70% 66 74 463
50% 66 74 505
40% 66 74 541
30% 66 74 540
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 319
95% 66 68 456
90% 66 68 480
70% 66 68 514
50% 66 68 572
40% 66 70 576
30% 66 71 559
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 326
95% 66 68 465
90% 66 68 490
70% 66 68 524
50% 66 68 579
40% 66 68 616
30% 66 68 609
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 349
95% 61 63 512
90% 61 63 536
70% 61 63 574
50% 61 63 650
40% 61 63 677
30% 61 63 677
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1851
95% 22 23 1987
90% 22 23 2018
70% 22 23 2032
50% 22 23 2046
40% 22 23 2066
30% 66 96 334
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 328
95% 66 68 467
90% 66 68 492
70% 66 68 526
50% 66 69 562
40% 66 69 601
30% 66 69 598
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 46 553
95% 65 67 471
90% 65 67 496
70% 65 67 533
50% 82 114 242
40% 82 116 267
30% 82 116 289
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 547
95% 66 68 468
90% 66 68 493
70% 66 68 527
50% 83 117 236
40% 83 117 266
30% 83 117 284
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 325
95% 66 68 464
90% 66 68 489
70% 66 68 523
50% 66 68 578
40% 66 68 615
30% 83 116 290
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 330
95% 66 74 397
90% 66 74 423
70% 66 74 452
50% 66 74 495
40% 83 121 252
30% 83 121 268
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 620
95% 66 74 401
90% 66 74 426
70% 66 74 455
50% 66 74 498
40% 66 76 515
30% 66 77 514
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 283
95% 66 74 404
90% 66 74 429
70% 66 74 457
50% 66 74 499
40% 83 121 253
30% 83 121 269
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 318
95% 66 68 454
90% 66 68 478
70% 66 68 512
50% 66 68 569
40% 83 116 268
30% 134 312 54
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 543
95% 46 47 788
90% 66 68 485
70% 66 68 519
50% 86 95 298
40% 95 105 287
30% 95 107 303
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 612
95% 63 64 498
90% 63 64 521
70% 63 64 560
50% 63 64 629
40% 63 64 662
30% 63 65 648
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.