Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 842
95 % 46 47 1157
90 % 46 47 1182
70 % 46 47 1207
50 % 66 74 773
40 % 66 79 750
30 % 66 79 749
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 42 966
95 % 42 42 1298 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 42 42 1326
70 % 42 42 1352
50 % 44 46 1229
40 % 44 46 1238
30 % 44 89 619
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 470
95 % 66 74 647 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 74 673
70 % 66 74 724
50 % 66 74 778
40 % 67 77 775
30 % 67 78 766
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 2111
95 % 66 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 66 68 762
70 % 66 68 814
50 % 90 197 200
40 % 205 580 20
30 % 205 580 35
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 468
95 % 66 74 646 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 66 74 672
70 % 66 74 723
50 % 66 74 775
40 % 66 74 814
30 % 204 555 41
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 2061
95 % 46 47 1155 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 46 47 1178
70 % 66 68 805
50 % 91 196 202
40 % 91 196 215
30 % 91 196 226
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 466
95 % 66 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 66 74 670
70 % 66 74 719
50 % 66 76 752
40 % 66 76 788
30 % 66 79 747
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 541
95 % 66 68 734
90 % 66 68 765
70 % 66 68 817
50 % 66 70 825
40 % 66 70 865
30 % 66 70 850
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 844
95 % 66 68 731 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 66 68 761
70 % 66 68 813
50 % 66 68 856
40 % 66 72 835
30 % 66 72 828
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 543
95 % 66 68 736 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 767
70 % 66 68 819
50 % 66 70 826
40 % 66 70 866
30 % 66 71 840
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 67 554
95 % 66 68 729 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 66 68 759
70 % 66 68 810
50 % 66 68 853
40 % 66 68 893
30 % 90 199 223
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 473
95 % 66 74 650 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 66 74 677
70 % 66 74 726
50 % 66 77 745
40 % 66 79 751
30 % 180 446 65
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 472
95 % 66 74 649 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 74 676
70 % 66 74 725
50 % 90 203 194
40 % 90 204 207
30 % 90 204 217
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 70 509
95 % 62 70 700 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 62 70 727
70 % 62 70 776
50 % 62 70 828
40 % 62 70 868
30 % 62 70 853
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 474
95 % 66 74 651
90 % 66 74 678
70 % 66 74 727
50 % 66 74 779
40 % 177 406 53
30 % 180 432 67
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 539
95 % 66 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 760
70 % 66 68 811
50 % 66 68 854
40 % 66 70 864
30 % 66 71 837
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 545
95 % 66 68 738 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 66 68 769
70 % 66 68 821
50 % 66 68 861
40 % 66 68 896
30 % 66 68 878
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 63 593
95 % 61 63 815 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 61 63 846
70 % 61 63 885
50 % 61 63 929
40 % 61 63 958
30 % 61 63 942
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 20 2704
95 % 22 23 2823 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 22 23 2871
70 % 22 23 2844
50 % 22 23 2802
40 % 22 23 2756
30 % 73 169 249
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 546
95 % 66 68 739 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 770
70 % 66 68 822
50 % 66 69 840
40 % 66 69 881
30 % 66 69 865
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 837
95 % 66 68 725 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 66 68 754
70 % 66 68 803
50 % 90 187 205
40 % 205 557 22
30 % 205 557 39
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 849
95 % 66 68 740 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 66 68 771
70 % 66 68 823
50 % 90 189 203
40 % 90 189 221
30 % 90 189 232
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 544
95 % 66 68 737 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 66 68 768
70 % 66 68 820
50 % 66 68 860
40 % 66 68 895
30 % 90 184 236
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 67 550
95 % 66 74 635 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 66 74 664
70 % 66 74 714
50 % 66 74 767
40 % 90 202 209
30 % 90 202 218
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 44 909
95 % 66 74 638 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 66 74 667
70 % 66 74 716
50 % 66 74 769
40 % 66 76 783
30 % 67 78 760
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 467
95 % 66 74 645 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 66 74 671
70 % 66 74 720
50 % 66 74 772
40 % 91 196 214
30 % 91 196 224
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 538
95 % 66 68 728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 757
70 % 66 68 808
50 % 66 68 852
40 % 90 194 217
30 % 205 570 38
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 845
95 % 46 47 1159 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 66 68 764
70 % 66 68 816
50 % 92 107 387
40 % 101 128 284
30 % 101 130 291
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 901
95 % 63 64 786
90 % 63 64 819
70 % 63 64 861
50 % 63 64 915
40 % 63 64 938
30 % 63 65 913

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures