Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 652
95 % 46 47 927
90 % 46 47 958
70 % 46 47 1002
50 % 66 74 602
40 % 66 79 583
30 % 66 79 589
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 42 778
95 % 42 42 1068
90 % 42 42 1088
70 % 42 42 1128
50 % 42 43 1143
40 % 42 43 1168
30 % 42 67 734
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 311
95 % 66 74 458
90 % 66 74 484
70 % 66 74 529
50 % 66 74 607
40 % 67 77 609
30 % 67 78 603
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1646
95 % 66 68 522
90 % 66 68 551
70 % 66 68 605
50 % 83 138 231
40 % 83 138 258
30 % 173 417 38
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 310
95 % 66 74 457
90 % 66 74 483
70 % 66 74 526
50 % 66 74 603
40 % 66 74 652
30 % 172 406 43
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1604
95 % 46 47 923
90 % 46 47 953
70 % 66 68 599
50 % 83 133 243
40 % 83 133 269
30 % 83 133 283
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 308
95 % 66 74 455
90 % 66 74 481
70 % 66 74 523
50 % 66 76 579
40 % 66 76 624
30 % 66 78 599
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 354
95 % 66 68 525
90 % 66 68 555
70 % 66 68 608
50 % 66 70 662
40 % 66 70 706
30 % 66 70 707
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 656
95 % 66 68 521
90 % 66 68 550
70 % 66 68 604
50 % 66 68 696
40 % 66 70 703
30 % 66 71 687
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 355
95 % 66 68 526
90 % 66 68 556
70 % 66 68 609
50 % 66 70 664
40 % 66 70 708
30 % 66 71 690
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 364
95 % 66 68 519
90 % 66 68 548
70 % 66 68 602
50 % 66 68 693
40 % 66 68 725
30 % 83 137 271
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 315
95 % 66 74 462
90 % 66 74 488
70 % 66 74 533
50 % 66 76 581
40 % 66 78 597
30 % 155 351 54
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 313
95 % 66 74 460
90 % 66 74 486
70 % 66 74 531
50 % 83 142 222
40 % 83 142 253
30 % 83 142 264
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 70 340
95 % 62 70 503
90 % 62 70 529
70 % 62 70 580
50 % 62 70 665
40 % 62 70 709
30 % 62 70 709
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 316
95 % 66 74 463
90 % 66 74 489
70 % 66 74 534
50 % 66 74 610
40 % 66 74 659
30 % 66 74 650
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 351
95 % 66 68 520
90 % 66 68 549
70 % 66 68 603
50 % 66 68 694
40 % 66 70 702
30 % 66 71 686
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 357
95 % 66 68 528
90 % 66 68 558
70 % 66 68 611
50 % 66 68 699
40 % 66 68 728
30 % 66 68 729
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 63 390
95 % 61 63 577
90 % 61 63 606
70 % 61 63 653
50 % 61 63 746
40 % 61 63 778
30 % 61 63 780
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2144
95 % 22 23 2247
90 % 22 23 2286
70 % 22 23 2293
50 % 22 23 2296
40 % 22 23 2297
30 % 66 114 330
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 359
95 % 66 68 530
90 % 66 68 560
70 % 66 68 613
50 % 66 69 682
40 % 66 69 720
30 % 66 69 723
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 647
95 % 66 68 516
90 % 66 68 545
70 % 66 68 598
50 % 83 133 242
40 % 83 135 262
30 % 83 135 274
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 668
95 % 66 68 532
90 % 66 68 561
70 % 66 68 614
50 % 83 135 236
40 % 83 135 263
30 % 83 135 276
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 356
95 % 66 68 527
90 % 66 68 557
70 % 66 68 610
50 % 66 68 698
40 % 66 68 727
30 % 83 133 284
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 362
95 % 66 74 448
90 % 66 74 475
70 % 66 74 519
50 % 66 74 596
40 % 83 142 250
30 % 83 142 261
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 727
95 % 66 74 451
90 % 66 74 478
70 % 66 74 522
50 % 66 74 598
40 % 66 76 622
30 % 66 77 610
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 309
95 % 66 74 456
90 % 66 74 482
70 % 66 74 524
50 % 66 74 601
40 % 84 142 252
30 % 84 142 263
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 350
95 % 66 68 518
90 % 66 68 547
70 % 66 68 601
50 % 66 68 692
40 % 83 137 259
30 % 173 412 42
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 659
95 % 46 47 932
90 % 66 68 554
70 % 66 68 607
50 % 86 95 347
40 % 95 109 309
30 % 95 111 320
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 720
95 % 63 64 560
90 % 63 64 590
70 % 63 64 638
50 % 63 64 732
40 % 63 64 763
30 % 63 65 757

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.