Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 799
95 % 46 47 1093 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 46 47 1109
70 % 46 47 1150
50 % 66 74 735
40 % 66 79 705
30 % 66 79 699
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 42 906
95 % 42 42 1229 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 42 42 1258
70 % 42 42 1290
50 % 44 46 1167
40 % 44 46 1177
30 % 44 85 625
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 447
95 % 66 74 619 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 74 647
70 % 66 74 688
50 % 66 74 740
40 % 67 77 733
30 % 67 78 712
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 1963
95 % 66 68 690 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 66 68 719
70 % 66 68 772
50 % 87 178 202
40 % 193 534 20
30 % 193 534 33
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 446
95 % 66 74 618 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 66 74 646
70 % 66 74 685
50 % 66 74 736
40 % 66 74 768
30 % 192 514 37
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1912
95 % 46 47 1091
90 % 46 47 1106
70 % 66 68 763
50 % 88 174 207
40 % 88 174 230
30 % 88 174 240
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 444
95 % 66 74 616
90 % 66 74 644
70 % 66 74 682
50 % 66 76 706
40 % 66 76 741
30 % 66 79 697
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 504
95 % 66 68 691 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 66 68 721
70 % 66 68 774
50 % 66 70 791
40 % 66 70 826
30 % 66 70 815
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 801
95 % 66 68 689 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 66 68 717
70 % 66 68 770
50 % 66 68 819
40 % 66 72 798
30 % 66 72 790
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 505
95 % 66 68 693
90 % 66 68 723
70 % 66 68 776
50 % 66 70 792
40 % 66 70 827
30 % 66 71 801
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 67 515
95 % 66 68 687 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 66 68 715
70 % 66 68 767
50 % 66 68 816
40 % 66 68 852
30 % 87 177 233
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 450
95 % 66 74 622 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 66 74 650
70 % 66 74 693
50 % 66 76 711
40 % 66 78 717
30 % 171 419 58
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 449
95 % 66 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 74 649
70 % 66 74 690
50 % 87 182 198
40 % 87 182 217
30 % 87 182 226
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 70 478
95 % 62 70 666
90 % 62 70 690
70 % 62 70 743
50 % 62 70 793
40 % 62 70 828
30 % 62 70 817
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 451
95 % 66 74 623 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 66 74 651
70 % 66 74 694
50 % 66 74 743
40 % 168 383 58
30 % 171 409 65
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 501
95 % 66 68 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 716
70 % 66 68 768
50 % 66 68 817
40 % 66 70 823
30 % 66 71 800
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 507
95 % 66 68 695 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 66 68 725
70 % 66 68 778
50 % 66 68 823
40 % 66 68 856
30 % 66 68 842
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 63 559
95 % 61 63 777 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 61 63 805
70 % 61 63 849
50 % 61 63 894
40 % 61 63 919
30 % 61 63 903
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 20 2521
95 % 22 23 2652 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 22 23 2696
70 % 22 23 2677
50 % 22 23 2644
40 % 22 23 2607
30 % 70 154 266
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 508
95 % 66 68 696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 726
70 % 66 68 779
50 % 66 69 804
40 % 66 69 840
30 % 66 69 831
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 796
95 % 66 68 684 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 66 68 711
70 % 66 68 762
50 % 87 173 206
40 % 87 175 225
30 % 87 175 236
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 806
95 % 66 68 697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 66 68 727
70 % 66 68 780
50 % 87 175 203
40 % 87 175 226
30 % 87 175 237
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 506
95 % 66 68 694 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 66 68 724
70 % 66 68 777
50 % 66 68 822
40 % 66 68 855
30 % 87 171 243
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 67 512
95 % 66 74 608 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 66 74 638
70 % 66 74 678
50 % 66 74 729
40 % 87 182 215
30 % 87 182 224
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 44 850
95 % 66 74 612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 66 74 642
70 % 66 74 680
50 % 66 74 731
40 % 66 76 739
30 % 67 78 706
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 74 445
95 % 66 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 66 74 645
70 % 66 74 683
50 % 66 74 734
40 % 88 182 216
30 % 88 182 225
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 68 500
95 % 66 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 66 68 713
70 % 66 68 765
50 % 66 68 815
40 % 87 176 223
30 % 193 525 36
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 47 802
95 % 46 47 1095 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 66 68 720
70 % 66 68 773
50 % 90 105 345
40 % 99 124 284
30 % 99 126 289
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 44 844
95 % 63 64 753 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 63 64 784
70 % 63 64 825
50 % 63 64 876
40 % 63 64 899
30 % 63 65 877

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.