Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 690
95 % 46 47 980
90 % 46 47 1005
70 % 46 47 1049
50 % 66 74 635
40 % 66 79 625
30 % 66 79 636
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 42 806
95 % 42 42 1120
90 % 42 42 1143
70 % 42 42 1187
50 % 44 46 1064
40 % 44 46 1081
30 % 44 70 706
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 322
95 % 66 74 478
90 % 66 74 508
70 % 66 74 553
50 % 66 74 639
40 % 67 77 647
30 % 67 78 649
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1731
95 % 66 68 546
90 % 66 68 576
70 % 66 68 626
50 % 85 146 222
40 % 85 146 248
30 % 187 446 35
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 321
95 % 66 74 477
90 % 66 74 506
70 % 66 74 550
50 % 66 74 636
40 % 66 74 683
30 % 186 435 38
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1685
95 % 46 47 976
90 % 46 47 1000
70 % 66 68 619
50 % 86 142 230
40 % 86 142 259
30 % 86 142 267
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 319
95 % 66 74 475
90 % 66 74 504
70 % 66 74 547
50 % 66 76 617
40 % 66 76 658
30 % 66 78 646
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 367
95 % 66 68 548
90 % 66 68 578
70 % 66 68 629
50 % 66 70 690
40 % 66 70 736
30 % 66 70 739
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 693
95 % 66 68 545
90 % 66 68 574
70 % 66 68 625
50 % 66 68 714
40 % 66 70 733
30 % 66 71 722
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 369
95 % 66 68 550
90 % 66 68 580
70 % 66 68 632
50 % 66 70 691
40 % 66 70 737
30 % 66 71 725
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 380
95 % 66 68 543
90 % 66 68 572
70 % 66 68 623
50 % 66 68 712
40 % 66 68 751
30 % 85 145 260
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 327
95 % 66 74 482
90 % 66 74 512
70 % 66 74 557
50 % 66 76 621
40 % 66 78 635
30 % 167 372 55
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 325
95 % 66 74 480
90 % 66 74 510
70 % 66 74 555
50 % 85 150 216
40 % 85 150 239
30 % 85 150 251
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 70 349
95 % 62 70 521
90 % 62 70 549
70 % 62 70 600
50 % 62 70 692
40 % 62 70 738
30 % 62 70 740
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 328
95 % 66 74 483
90 % 66 74 513
70 % 66 74 558
50 % 66 74 641
40 % 66 74 688
30 % 66 74 691
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 364
95 % 66 68 544
90 % 66 68 573
70 % 66 68 624
50 % 66 68 713
40 % 66 70 731
30 % 66 71 721
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 371
95 % 66 68 552
90 % 66 68 582
70 % 66 68 634
50 % 66 68 718
40 % 66 68 755
30 % 66 68 759
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 63 425
95 % 61 63 631
90 % 61 63 667
70 % 61 63 709
50 % 61 63 777
40 % 61 63 812
30 % 61 63 808
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2255
95 % 22 23 2354
90 % 22 23 2399
70 % 22 23 2400
50 % 22 23 2388
40 % 22 23 2384
30 % 68 122 312
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 372
95 % 66 68 553
90 % 66 68 583
70 % 66 68 635
50 % 66 69 703
40 % 66 69 745
30 % 66 69 751
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 687
95 % 66 68 540
90 % 66 68 568
70 % 66 68 618
50 % 85 141 229
40 % 85 143 251
30 % 85 143 261
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 704
95 % 66 68 555
90 % 66 68 585
70 % 66 68 636
50 % 85 143 224
40 % 85 143 252
30 % 85 143 262
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 370
95 % 66 68 551
90 % 66 68 581
70 % 66 68 633
50 % 66 68 717
40 % 66 68 754
30 % 85 140 273
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 376
95 % 66 74 468
90 % 66 74 498
70 % 66 74 543
50 % 66 74 630
40 % 85 150 236
30 % 85 150 249
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 756
95 % 66 74 471
90 % 66 74 501
70 % 66 74 546
50 % 66 74 632
40 % 66 76 657
30 % 66 77 656
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 320
95 % 66 74 476
90 % 66 74 505
70 % 66 74 548
50 % 66 74 634
40 % 86 151 235
30 % 86 151 248
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 363
95 % 66 68 542
90 % 66 68 571
70 % 66 68 622
50 % 66 68 711
40 % 85 145 249
30 % 187 441 37
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 696
95 % 46 47 982
90 % 66 68 577
70 % 66 68 627
50 % 88 101 321
40 % 97 115 285
30 % 97 117 296
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 750
95 % 63 64 605
90 % 63 64 639
70 % 63 64 685
50 % 63 64 763
40 % 63 64 797
30 % 63 65 786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.