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A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 500
95% 46 47 738
90% 46 47 767
70% 46 47 810
50% 66 74 495
40% 66 78 488
30% 66 78 504
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 600
95% 42 42 858
90% 42 42 883
70% 42 42 927
50% 42 43 975
40% 42 43 1009
30% 42 55 755
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 281
95% 66 74 398
90% 66 74 424
70% 66 74 450
50% 66 74 497
40% 67 77 501
30% 67 78 505
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1405
95% 66 68 454
90% 66 68 478
70% 66 68 510
50% 94 132 246
40% 94 132 272
30% 190 443 48
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 280
95% 66 74 397
90% 66 74 423
70% 66 74 449
50% 66 74 496
40% 66 74 529
30% 189 435 53
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1373
95% 46 47 736
90% 46 47 765
70% 66 68 502
50% 94 130 253
40% 94 130 279
30% 94 130 304
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 278
95% 66 74 395
90% 66 74 421
70% 66 74 447
50% 66 76 479
40% 66 76 510
30% 66 78 502
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 318
95% 66 68 456
90% 66 68 481
70% 66 68 513
50% 66 70 535
40% 66 70 563
30% 66 70 567
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 502
95% 66 68 452
90% 66 68 476
70% 66 68 508
50% 66 68 558
40% 66 70 562
30% 66 71 552
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 321
95% 66 68 458
90% 66 68 483
70% 66 68 515
50% 66 70 537
40% 66 70 566
30% 66 71 554
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 331
95% 66 68 450
90% 66 68 474
70% 66 68 506
50% 66 68 555
40% 66 68 588
30% 94 133 293
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 285
95% 66 74 400
90% 66 74 426
70% 66 74 452
50% 66 76 480
40% 66 78 492
30% 161 383 70
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 284
95% 66 74 399
90% 66 74 425
70% 66 74 451
50% 94 139 232
40% 94 139 258
30% 94 139 272
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 305
95% 62 70 434
90% 62 70 455
70% 62 70 485
50% 62 70 539
40% 62 70 568
30% 62 70 569
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 286
95% 66 74 401
90% 66 74 427
70% 66 74 453
50% 66 74 498
40% 66 74 530
30% 66 74 531
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 316
95% 66 68 451
90% 66 68 475
70% 66 68 507
50% 66 68 556
40% 66 70 561
30% 66 71 551
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 323
95% 66 68 460
90% 66 68 485
70% 66 68 517
50% 66 68 562
40% 66 68 593
30% 66 68 589
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 348
95% 61 63 506
90% 61 63 529
70% 61 63 565
50% 61 63 611
40% 61 63 639
30% 61 63 642
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 1823
95% 22 23 1953
90% 22 23 1984
70% 22 23 2000
50% 22 23 2018
40% 22 23 2036
30% 77 108 353
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 325
95% 66 68 462
90% 66 68 487
70% 66 68 519
50% 66 69 550
40% 66 69 582
30% 66 69 582
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 46 514
95% 65 67 467
90% 65 67 492
70% 65 67 526
50% 88 123 264
40% 88 125 294
30% 88 125 311
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 507
95% 66 68 463
90% 66 68 488
70% 66 68 520
50% 94 132 247
40% 94 132 273
30% 94 132 297
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 322
95% 66 68 459
90% 66 68 484
70% 66 68 516
50% 66 68 561
40% 66 68 592
30% 94 131 301
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 328
95% 66 74 390
90% 66 74 417
70% 66 74 444
50% 66 74 491
40% 89 130 278
30% 89 130 302
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 553
95% 66 74 393
90% 66 74 419
70% 66 74 446
50% 66 74 493
40% 66 76 509
30% 66 77 508
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 279
95% 66 74 396
90% 66 74 422
70% 66 74 448
50% 66 74 494
40% 94 136 265
30% 94 136 287
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 315
95% 66 68 449
90% 66 68 473
70% 66 68 505
50% 66 68 554
40% 89 125 295
30% 185 432 55
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 504
95% 46 47 744
90% 66 68 480
70% 66 68 512
50% 86 97 289
40% 94 106 280
30% 94 108 296
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 547
95% 63 64 491
90% 63 64 514
70% 63 64 552
50% 63 64 598
40% 63 64 627
30% 63 65 623
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.