POP-OUT | CLOSE

An Information Portal to 111749 Biological Macromolecular Structures

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
Sequence Clustering and Redundancy Reduction Results
2QA4
Sequence Clusters for the Sequence Entities in PDB 2QA4
Entity #1: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 50S ribosomal protein L10e protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 597
95% 46 47 860
90% 46 47 896
70% 46 47 934
50% 66 74 556
40% 66 79 538
30% 66 79 544
Entity #11: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 42 724
95% 42 42 1005
90% 42 42 1025
70% 42 42 1061
50% 42 43 1080
40% 42 43 1102
30% 42 62 748
Entity #12: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 293
95% 66 74 427
90% 66 74 453
70% 66 74 491
50% 66 74 560
40% 67 77 562
30% 67 78 556
Entity #13: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1538
95% 66 68 489
90% 66 68 512
70% 66 68 562
50% 83 128 228
40% 83 128 257
30% 154 366 45
Entity #14: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 292
95% 66 74 426
90% 66 74 452
70% 66 74 488
50% 66 74 557
40% 66 74 598
30% 153 358 50
Entity #15: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 24 1500
95% 46 47 857
90% 46 47 893
70% 66 68 555
50% 83 126 236
40% 83 126 264
30% 83 126 279
Entity #16: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 290
95% 66 74 423
90% 66 74 450
70% 66 74 485
50% 66 76 534
40% 66 76 576
30% 66 78 553
Entity #17: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 331
95% 66 68 491
90% 66 68 515
70% 66 68 565
50% 66 70 613
40% 66 70 650
30% 66 70 646
Entity #18: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 602
95% 66 68 487
90% 66 68 510
70% 66 68 560
50% 66 68 644
40% 66 70 647
30% 66 71 628
Entity #19: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 332
95% 66 68 492
90% 66 68 516
70% 66 68 566
50% 66 70 615
40% 66 70 652
30% 66 71 630
Entity #2: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 343
95% 66 68 485
90% 66 68 508
70% 66 68 558
50% 66 68 641
40% 66 68 674
30% 83 129 268
Entity #21: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 299
95% 66 74 431
90% 66 74 457
70% 66 74 494
50% 66 76 538
40% 66 78 551
30% 136 310 61
Entity #22: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 295
95% 66 74 429
90% 66 74 455
70% 66 74 492
50% 83 135 218
40% 83 135 242
30% 83 135 257
Entity #23: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 70 320
95% 62 70 467
90% 62 70 490
70% 62 70 539
50% 62 70 616
40% 62 70 653
30% 62 70 648
Entity #24: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 301
95% 66 74 432
90% 66 74 458
70% 66 74 495
50% 66 74 564
40% 66 74 603
30% 66 74 598
Entity #25: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 329
95% 66 68 486
90% 66 68 509
70% 66 68 559
50% 66 68 642
40% 66 70 646
30% 66 71 627
Entity #26: Chains: X - 50S RIBOSOMAL PROTEIN L31E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 334
95% 66 68 494
90% 66 68 518
70% 66 68 568
50% 66 68 648
40% 66 68 678
30% 66 68 677
Entity #27: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 366
95% 61 63 540
90% 61 63 569
70% 61 63 621
50% 61 63 709
40% 61 63 736
30% 61 63 737
Entity #28: Chains: Z - 50S ribosomal protein L37Ae protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 20 2002
95% 22 23 2115
90% 22 23 2149
70% 22 23 2155
50% 22 23 2161
40% 22 23 2166
30% 66 107 328
Entity #29: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 336
95% 66 68 496
90% 66 68 520
70% 66 68 570
50% 66 69 633
40% 66 69 669
30% 66 69 666
Entity #3: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 593
95% 66 68 481
90% 66 68 504
70% 66 68 554
50% 83 126 235
40% 83 128 255
30% 83 128 270
Entity #30: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 609
95% 66 68 497
90% 66 68 521
70% 66 68 571
50% 83 128 229
40% 83 128 258
30% 83 128 271
Entity #31: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 333
95% 66 68 493
90% 66 68 517
70% 66 68 567
50% 66 68 647
40% 66 68 677
30% 83 127 275
Entity #4: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 67 339
95% 66 74 416
90% 66 74 443
70% 66 74 481
50% 66 74 550
40% 83 132 248
30% 83 132 262
Entity #5: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 677
95% 66 74 420
90% 66 74 447
70% 66 74 484
50% 66 74 552
40% 66 76 572
30% 66 77 561
Entity #6: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 74 291
95% 66 74 425
90% 66 74 451
70% 66 74 486
50% 66 74 555
40% 84 134 244
30% 84 134 259
Entity #7: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 68 328
95% 66 68 484
90% 66 68 507
70% 66 68 557
50% 66 68 640
40% 83 127 261
30% 154 361 48
Entity #8: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 47 604
95% 46 47 867
90% 66 68 514
70% 66 68 564
50% 86 95 328
40% 95 105 302
30% 95 107 309
Entity #9: Chains: G - ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 44 671
95% 63 64 527
90% 63 64 554
70% 63 64 602
50% 63 64 693
40% 63 64 720
30% 63 65 715
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.