Sequence Similarity Clusters for the Entities in PDB 2QA4

Entity #1 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L10e protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 740
95 % 46 47 1028
90 % 46 47 1047
70 % 46 47 1089
50 % 66 74 671
40 % 66 79 658
30 % 66 79 668
Entity #11 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 42 851
95 % 42 42 1159
90 % 42 42 1183
70 % 42 42 1228
50 % 44 46 1107
40 % 44 46 1123
30 % 44 85 596
Entity #12 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 404
95 % 66 74 564
90 % 66 74 592
70 % 66 74 626
50 % 66 74 676
40 % 67 77 681
30 % 67 78 677
Entity #13 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1832
95 % 66 68 636
90 % 66 68 663
70 % 66 68 705
50 % 86 174 198
40 % 86 174 217
30 % 191 506 29
Entity #14 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 403
95 % 66 74 563
90 % 66 74 591
70 % 66 74 623
50 % 66 74 672
40 % 66 74 711
30 % 190 488 35
Entity #15 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1785
95 % 46 47 1026
90 % 46 47 1044
70 % 66 68 697
50 % 87 170 205
40 % 87 170 227
30 % 87 170 233
Entity #16 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 401
95 % 66 74 561
90 % 66 74 589
70 % 66 74 620
50 % 66 76 651
40 % 66 76 693
30 % 66 79 665
Entity #17 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 451
95 % 66 68 637
90 % 66 68 665
70 % 66 68 707
50 % 66 70 729
40 % 66 70 766
30 % 66 70 765
Entity #18 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 742
95 % 66 68 635
90 % 66 68 661
70 % 66 68 703
50 % 66 68 754
40 % 66 72 737
30 % 66 72 736
Entity #19 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 453
95 % 66 68 640
90 % 66 68 667
70 % 66 68 711
50 % 66 70 730
40 % 66 70 767
30 % 66 71 749
Entity #2 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 462
95 % 66 68 633
90 % 66 68 659
70 % 66 68 700
50 % 66 68 751
40 % 66 68 785
30 % 86 173 226
Entity #21 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 410
95 % 66 74 569
90 % 66 74 596
70 % 66 74 630
50 % 66 76 654
40 % 66 78 670
30 % 170 397 57
Entity #22 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 407
95 % 66 74 566
90 % 66 74 594
70 % 66 74 628
50 % 86 178 191
40 % 86 178 208
30 % 86 178 221
Entity #23 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 70 434
95 % 62 70 615
90 % 62 70 641
70 % 62 70 680
50 % 62 70 731
40 % 62 70 769
30 % 62 70 767
Entity #24 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 412
95 % 66 74 570
90 % 66 74 597
70 % 66 74 631
50 % 66 74 678
40 % 66 74 715
30 % 66 74 715
Entity #25 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 449
95 % 66 68 634
90 % 66 68 660
70 % 66 68 701
50 % 66 68 752
40 % 66 70 763
30 % 66 71 746
Entity #26 | Chains: X
50S RIBOSOMAL PROTEIN L31E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 455
95 % 66 68 642
90 % 66 68 669
70 % 66 68 713
50 % 66 68 759
40 % 66 68 790
30 % 66 68 788
Entity #27 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 63 496
95 % 61 63 706
90 % 61 63 738
70 % 61 63 783
50 % 61 63 830
40 % 61 63 851
30 % 61 63 847
Entity #28 | Chains: Z
50S ribosomal protein L37Ae protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2380
95 % 22 23 2514
90 % 22 23 2562
70 % 22 23 2540
50 % 22 23 2502
40 % 22 23 2481
30 % 69 150 262
Entity #29 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 456
95 % 66 68 643
90 % 66 68 670
70 % 66 68 716
50 % 66 69 739
40 % 66 69 779
30 % 66 69 778
Entity #3 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 736
95 % 66 68 630
90 % 66 68 656
70 % 66 68 696
50 % 86 169 204
40 % 86 171 223
30 % 86 171 230
Entity #30 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 749
95 % 66 68 644
90 % 66 68 671
70 % 66 68 717
50 % 86 171 201
40 % 86 171 224
30 % 86 171 231
Entity #31 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 454
95 % 66 68 641
90 % 66 68 668
70 % 66 68 712
50 % 66 68 758
40 % 66 68 789
30 % 86 167 237
Entity #4 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 67 459
95 % 66 74 552
90 % 66 74 582
70 % 66 74 615
50 % 66 74 666
40 % 86 178 205
30 % 86 178 218
Entity #5 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 796
95 % 66 74 556
90 % 66 74 586
70 % 66 74 619
50 % 66 74 668
40 % 66 76 691
30 % 67 78 674
Entity #6 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 74 402
95 % 66 74 562
90 % 66 74 590
70 % 66 74 621
50 % 66 74 670
40 % 87 178 207
30 % 87 178 220
Entity #7 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 68 448
95 % 66 68 632
90 % 66 68 658
70 % 66 68 699
50 % 66 68 750
40 % 86 172 221
30 % 191 497 32
Entity #8 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 47 743
95 % 46 47 1030
90 % 66 68 664
70 % 66 68 706
50 % 90 105 311
40 % 99 120 281
30 % 99 122 278
Entity #9 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMO protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 44 790
95 % 63 64 682
90 % 63 64 714
70 % 63 64 757
50 % 63 64 811
40 % 63 64 834
30 % 63 65 821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.