Sequence Similarity Clusters for the Entities in PDB 2PNM

Entity #1 | Chains: A
Protease VP4 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6687
95 % 2 2 7319 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.0
PDBFlex
90 % 2 2 7311
70 % 4 7 4258
50 % 4 7 4197
40 % 4 7 3875
30 % 4 7 3784

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2PNL 1 A, B, C, D, E, F, G, H, I, J Protease VP4 VP4tri (residues 514-716) 11002
2 2PNM 1 A Protease VP4 VP4hex (residues 524-716) 11002 3.4.21 | Details