Sequence Similarity Clusters for the Entities in PDB 2PNM

Entity #1 | Chains: A
Protease VP4 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6952
95 % 2 2 7360 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.0
PDBFlex
90 % 2 2 7588
70 % 4 7 4286
50 % 4 7 4187
40 % 4 7 4110
30 % 4 7 4011

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4IZK 1 A Yellowtail Ascites Virus (YAV) VP4 protease 59816
2 4IZK 2 B Yellowtail Ascites Virus (YAV) VP4 protease 59816
3 2PNL 1 A, B, C, D, E, F, G, H, I, J Protease VP4 VP4tri (residues 514-716) 11002
4 2PNM 1 A Protease VP4 VP4hex (residues 524-716) 11002 3.4.21 | Details
5 4IZJ 1 A, E Yellowtail Ascites Virus (YAV) VP4 protease 59816
6 4IZJ 2 B, C Yellowtail Ascites Virus (YAV) VP4 protease 59816
7 4IZJ 3 D Yellowtail Ascites Virus (YAV) VP4 protease 59816