Sequence Similarity Clusters for the Entities in PDB 2OT8

Entity #1 | Chains: A,B
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25914
95 % 13 15 2998 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 13 15 3039
70 % 13 15 3001
50 % 13 15 2955
40 % 13 15 2899
30 % 13 15 2716
Entity #2 | Chains: C,D
Heterogeneous nuclear ribonucleoprotein M protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51004
95 % 1 1 38110
90 % 1 1 36357
70 % 1 1 32312
50 % 1 1 27612
40 % 1 1 24419
30 % 1 1 20772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures