Sequence Similarity Clusters for the Entities in PDB 2OT8

Entity #1 | Chains: A,B
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25322
95 % 13 15 2928 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 3.9
PDBFlex
90 % 13 15 2967
70 % 13 15 2931
50 % 13 15 2891
40 % 13 15 2842
30 % 13 15 2665
Entity #2 | Chains: C,D
Heterogeneous nuclear ribonucleoprotein M protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50020
95 % 1 1 37413
90 % 1 1 35717
70 % 1 1 31761
50 % 1 1 27179
40 % 1 1 24030
30 % 1 1 20457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures