Sequence Similarity Clusters for the Entities in PDB 2OT8

Entity #1 | Chains: A,B
Transportin-1 protein, length: 852 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23961
95 % 13 15 2776 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.4
PDBFlex
90 % 13 15 2822
70 % 13 15 2790
50 % 13 15 2754
40 % 13 15 2720
30 % 13 15 2534
Entity #2 | Chains: C,D
Heterogeneous nuclear ribonucleoprotein M protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47645
95 % 1 1 35655
90 % 1 1 34093
70 % 1 1 30424
50 % 1 1 26088
40 % 1 1 23080
30 % 1 1 19633

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.