Sequence Similarity Clusters for the Entities in PDB 2OJT

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1289
95 % 27 43 518 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.8
PDBFlex
90 % 27 43 548
70 % 54 88 239
50 % 167 278 37
40 % 167 279 49
30 % 181 295 61

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures