Sequence Similarity Clusters for the Entities in PDB 2OJT

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1265
95 % 27 43 508 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.8
PDBFlex
90 % 27 43 541
70 % 54 86 241
50 % 167 276 35
40 % 167 277 47
30 % 181 293 55

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures