Sequence Similarity Clusters for the Entities in PDB 2OJT

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1245
95 % 27 43 478 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.8
PDBFlex
90 % 27 43 518
70 % 54 86 234
50 % 163 272 36
40 % 163 273 48
30 % 177 289 57

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.