Sequence Similarity Clusters for the Entities in PDB 2O39

Entity #1 | Chains: A,B
Fiber protein protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15623
95 % 3 3 14541 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 6 3243
70 % 5 6 3191
50 % 10 13 945
40 % 11 14 921
30 % 35 39 437
Entity #2 | Chains: C,D
Membrane cofactor protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 2662
95 % 1 4 2992 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 4 3045
70 % 1 4 2997
50 % 1 4 2950
40 % 1 4 2880
30 % 28 58 545

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures