Sequence Similarity Clusters for the Entities in PDB 2O39

Entity #1 | Chains: A,B
Fiber protein protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15990
95 % 3 3 14951 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 6 3325
70 % 5 6 3286
50 % 10 13 931
40 % 10 13 960
30 % 33 37 442
Entity #2 | Chains: C,D
Membrane cofactor protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 2312
95 % 1 4 2968
90 % 1 4 3006
70 % 1 4 2967
50 % 1 4 2924
40 % 1 4 2873
30 % 21 49 649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures