Sequence Similarity Clusters for the Entities in PDB 2O39

Entity #1 | Chains: A,B
Fiber protein protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14993
95 % 3 3 14096 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 6 3122
70 % 5 6 3099
50 % 10 13 894
40 % 10 13 919
30 % 33 37 413
Entity #2 | Chains: C,D
Membrane cofactor protein protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 2152
95 % 1 4 2793 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 4 2834
70 % 1 4 2798
50 % 1 4 2765
40 % 1 4 2725
30 % 21 48 650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.