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HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 11428
95% 8 15 3071
90% 8 15 3108
70% 10 29 1090
50% 10 29 1149
40% 10 29 1176
30% 10 31 1074
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46870
95% 3 3 14150
90% 3 3 13884
70% 593 1548 2
50% 1224 3210 1
40% 1225 3211 1
30% 1361 3793 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9831
95% 3 4 9631
90% 3 4 9504
70% 509 1349 3
50% 1225 3210 1
40% 1226 3211 1
30% 1362 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.