POP-OUT | CLOSE
 
HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 10822
95% 8 15 2824
90% 8 15 2872
70% 10 27 1155
50% 10 27 1218
40% 10 27 1252
30% 10 29 1152
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44571
95% 3 3 13510
90% 3 3 13265
70% 573 1474 2
50% 1182 3058 1
40% 1183 3059 1
30% 1313 3617 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9286
95% 3 4 9196
90% 3 4 9083
70% 490 1286 3
50% 1183 3058 1
40% 1184 3059 1
30% 1314 3617 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.