Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12430
95 % 8 15 3385
90 % 8 15 3424
70 % 10 31 1013
50 % 10 31 1063
40 % 10 31 1088
30 % 45 111 242
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50771
95 % 3 3 15353
90 % 3 3 15038
70 % 686 1790 1
50 % 1410 3692 1
40 % 1411 3693 1
30 % 1566 4355 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10725
95 % 3 4 10437
90 % 3 4 10285
70 % 576 1526 3
50 % 1411 3692 1
40 % 1412 3693 1
30 % 1567 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.