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HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 11479
95% 8 15 3086
90% 8 15 3124
70% 10 29 1096
50% 10 29 1156
40% 10 29 1181
30% 10 31 1076
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47137
95% 3 3 14203
90% 3 3 13936
70% 599 1561 2
50% 1236 3236 1
40% 1237 3237 1
30% 1373 3821 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9878
95% 3 4 9666
90% 3 4 9540
70% 512 1358 3
50% 1237 3236 1
40% 1238 3237 1
30% 1374 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.