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An Information Portal to 105212 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 11044
95% 8 15 2949
90% 8 15 2989
70% 10 28 1083
50% 10 28 1150
40% 10 28 1171
30% 10 30 1091
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45520
95% 3 3 13769
90% 3 3 13519
70% 580 1498 2
50% 1196 3106 1
40% 1197 3107 1
30% 1331 3679 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9484
95% 3 4 9367
90% 3 4 9250
70% 496 1303 3
50% 1197 3106 1
40% 1198 3107 1
30% 1332 3679 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.