Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14299
95 % 8 15 3877 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 8 15 3911
70 % 50 126 179
50 % 50 126 218
40 % 50 126 240
30 % 50 129 245
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57338
95 % 3 3 17444 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 3 17082
70 % 821 2172 1
50 % 1700 4489 1
40 % 1700 4489 1
30 % 1911 5290 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12421
95 % 3 4 11947 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 4 11756
70 % 684 1822 2
50 % 1701 4489 1
40 % 1701 4489 1
30 % 1912 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.