Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14956
95 % 8 15 4054 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.3
PDBFlex
90 % 8 15 4094
70 % 50 128 181
50 % 50 128 223
40 % 50 128 241
30 % 50 131 249
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20886
95 % 3 4 10506 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 4 10373
70 % 870 2311 2
50 % 1806 4781 1
40 % 1806 4781 1
30 % 2034 5635 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7281
95 % 3 5 7852 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 5 7796
70 % 883 2362 1
50 % 1807 4781 1
40 % 1807 4781 1
30 % 2035 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures