Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 13059
95 % 8 15 3536
90 % 8 15 3573
70 % 48 121 166
50 % 48 121 198
40 % 48 121 214
30 % 48 124 223
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52838
95 % 3 3 16007
90 % 3 3 15683
70 % 726 1909 1
50 % 1492 3934 1
40 % 1493 3935 1
30 % 1673 4663 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11286
95 % 3 4 10954
90 % 3 4 10790
70 % 608 1617 3
50 % 1493 3934 1
40 % 1494 3935 1
30 % 1674 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.