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HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 11923
95% 8 15 3240
90% 8 15 3278
70% 10 31 973
50% 10 31 1021
40% 10 31 1044
30% 10 33 979
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48714
95% 3 3 14753
90% 3 3 14460
70% 640 1672 1
50% 1317 3457 1
40% 1318 3458 1
30% 1459 4083 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10271
95% 3 4 10012
90% 3 4 9875
70% 542 1445 3
50% 1318 3457 1
40% 1319 3458 1
30% 1460 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.