Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12950
95 % 8 15 3515
90 % 8 15 3552
70 % 48 120 166
50 % 48 120 196
40 % 48 120 213
30 % 48 123 222
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52463
95 % 3 3 15900
90 % 3 3 15574
70 % 723 1894 1
50 % 1485 3902 1
40 % 1486 3903 1
30 % 1666 4631 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11191
95 % 3 4 10866
90 % 3 4 10699
70 % 607 1609 3
50 % 1486 3902 1
40 % 1487 3903 1
30 % 1667 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.