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An Information Portal to 107049 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 11349
95% 8 15 3051
90% 8 15 3089
70% 10 29 1085
50% 10 29 1145
40% 10 29 1170
30% 10 31 1068
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46626
95% 3 3 14097
90% 3 3 13831
70% 589 1537 2
50% 1216 3188 1
40% 1217 3189 1
30% 1353 3771 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9762
95% 3 4 9581
90% 3 4 9457
70% 505 1339 3
50% 1217 3188 1
40% 1218 3189 1
30% 1354 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.