Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12858
95 % 8 15 3489
90 % 8 15 3526
70 % 48 120 165
50 % 48 120 196
40 % 48 120 212
30 % 48 123 222
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52178
95 % 3 3 15801
90 % 3 3 15484
70 % 715 1866 1
50 % 1469 3846 1
40 % 1470 3847 1
30 % 1650 4574 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11110
95 % 3 4 10785
90 % 3 4 10617
70 % 600 1583 3
50 % 1470 3846 1
40 % 1471 3847 1
30 % 1651 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.