Sequence Similarity Clusters for the Entities in PDB 2NY7

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 13589
95 % 8 15 3688
90 % 8 15 3726
70 % 49 125 168
50 % 49 125 201
40 % 49 125 221
30 % 49 128 228
Entity #2 | Chains: H
ANTIBODY b12, HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54593
95 % 3 3 16547
90 % 3 3 16218
70 % 767 2010 1
50 % 1587 4154 1
40 % 1587 4155 1
30 % 1772 4901 1
Entity #3 | Chains: L
ANTIBODY b12, LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 11773
95 % 3 4 11353
90 % 3 4 11183
70 % 645 1704 2
50 % 1588 4154 1
40 % 1588 4155 1
30 % 1773 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.