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HIV-1 gp120 Envelope Glycoprotein Complexed with the Broadly Neutralizing CD4-Binding-Site Antibody b12
Sequence Clustering and Redundancy Reduction Results
2NY7
Sequence Clusters for the Sequence Entities in PDB 2NY7
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 10834
95% 8 15 2825
90% 8 15 2873
70% 10 27 1155
50% 10 27 1218
40% 10 27 1253
30% 10 29 1153
Entity #2: Chains: H - ANTIBODY b12, HEAVY CHAIN protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44648
95% 3 3 13528
90% 3 3 13283
70% 575 1480 2
50% 1186 3070 1
40% 1187 3071 1
30% 1317 3629 1
Entity #3: Chains: L - ANTIBODY b12, LIGHT CHAIN protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 9298
95% 3 4 9207
90% 3 4 9094
70% 491 1291 3
50% 1187 3070 1
40% 1188 3071 1
30% 1318 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.