Sequence Similarity Clusters for the Entities in PDB 2NY6

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50979
95 % 14 15 3688
90 % 14 15 3726
70 % 75 125 168
50 % 75 125 201
40 % 75 125 221
30 % 75 128 228
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 35 694
95 % 23 40 827
90 % 23 40 860
70 % 23 40 901
50 % 23 40 942
40 % 23 40 963
30 % 23 40 949
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 1126
95 % 17 24 1406
90 % 381 613 3
70 % 1075 1704 2
50 % 2610 4154 1
40 % 2610 4155 1
30 % 3011 4901 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 1124
95 % 17 24 1404
90 % 17 24 1429
70 % 1263 2010 1
50 % 2611 4154 1
40 % 2611 4155 1
30 % 3012 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.