Sequence Similarity Clusters for the Entities in PDB 2NY6

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49444
95 % 14 15 3545
90 % 14 15 3582
70 % 73 121 166
50 % 73 121 198
40 % 73 121 214
30 % 73 124 223
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 727
95 % 23 39 843
90 % 23 39 877
70 % 23 39 918
50 % 23 39 961
40 % 23 39 981
30 % 23 39 976
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1223
95 % 17 23 1496
90 % 301 505 3
70 % 1021 1620 3
50 % 2477 3940 1
40 % 2478 3941 1
30 % 2872 4669 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1221
95 % 17 23 1492
90 % 17 23 1523
70 % 1203 1912 1
50 % 2478 3940 1
40 % 2479 3941 1
30 % 2873 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.