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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY6
Sequence Clusters for the Sequence Entities in PDB 2NY6
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42380
95% 14 15 2940
90% 14 15 2981
70% 19 28 1083
50% 19 28 1151
40% 19 28 1169
30% 19 30 1090
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 29 851
95% 23 34 952
90% 23 34 971
70% 23 34 999
50% 23 34 1048
40% 23 34 1076
30% 23 34 1054
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 1534
95% 17 20 1681
90% 225 369 5
70% 834 1301 3
50% 1993 3102 1
40% 1994 3103 1
30% 2290 3671 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 1531
95% 17 20 1677
90% 17 20 1723
70% 963 1496 2
50% 1994 3102 1
40% 1995 3103 1
30% 2291 3671 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.