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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY6
Sequence Clusters for the Sequence Entities in PDB 2NY6
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45112
95% 14 15 3166
90% 14 15 3203
70% 19 29 1119
50% 19 29 1187
40% 19 29 1214
30% 19 31 1105
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 30 876
95% 23 35 993
90% 23 35 1014
70% 23 35 1043
50% 23 35 1088
40% 23 35 1112
30% 23 35 1085
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 18 1570
95% 17 21 1744
90% 259 425 4
70% 908 1434 3
50% 2181 3425 1
40% 2182 3426 1
30% 2500 4043 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 18 1568
95% 17 21 1741
90% 17 21 1786
70% 1056 1656 1
50% 2182 3425 1
40% 2183 3426 1
30% 2501 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.