Sequence Similarity Clusters for the Entities in PDB 2NY6

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54799
95 % 14 15 3973
90 % 14 15 4010
70 % 76 126 178
50 % 76 126 221
40 % 76 126 240
30 % 76 129 248
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 38 699
95 % 23 43 833
90 % 23 43 863
70 % 23 43 895
50 % 23 43 941
40 % 23 43 968
30 % 23 43 940
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 1264
95 % 19 32 1110
90 % 426 697 3
70 % 1401 2280 1
50 % 2849 4619 1
40 % 2849 4619 1
30 % 3304 5440 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 1262
95 % 17 25 1390
90 % 17 25 1413
70 % 1379 2238 2
50 % 2850 4619 1
40 % 2850 4619 1
30 % 3305 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.