Sequence Similarity Clusters for the Entities in PDB 2NY6

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50149
95 % 14 15 3592
90 % 14 15 3633
70 % 73 122 167
50 % 73 122 198
40 % 73 122 214
30 % 73 125 226
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 734
95 % 23 39 855
90 % 23 39 889
70 % 23 39 930
50 % 23 39 979
40 % 23 39 994
30 % 23 39 986
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1252
95 % 17 23 1532
90 % 363 585 3
70 % 1036 1648 3
50 % 2518 4012 1
40 % 2519 4014 1
30 % 2918 4750 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1250
95 % 17 23 1528
90 % 17 23 1564
70 % 1221 1945 1
50 % 2519 4012 1
40 % 2520 4014 1
30 % 2919 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.