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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY6
Sequence Clusters for the Sequence Entities in PDB 2NY6
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43395
95% 14 15 3045
90% 14 15 3083
70% 19 29 1085
50% 19 29 1145
40% 19 29 1168
30% 19 31 1066
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 30 843
95% 23 35 945
90% 23 35 964
70% 23 35 997
50% 23 35 1042
40% 23 35 1067
30% 23 35 1046
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 18 1510
95% 17 21 1667
90% 229 379 5
70% 854 1337 3
50% 2037 3184 1
40% 2038 3185 1
30% 2342 3767 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 18 1509
95% 17 21 1665
90% 17 21 1712
70% 983 1535 2
50% 2038 3184 1
40% 2039 3185 1
30% 2343 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.