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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T123C, T257S, V275C,S334A, S375W, Q428C, G431C) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY6
Sequence Clusters for the Sequence Entities in PDB 2NY6
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42766
95% 14 15 2977
90% 14 15 3014
70% 19 28 1097
50% 19 28 1169
40% 19 28 1188
30% 19 30 1107
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 29 857
95% 23 34 960
90% 23 34 978
70% 23 34 1007
50% 23 34 1057
40% 23 34 1086
30% 23 34 1063
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 1549
95% 17 20 1698
90% 227 374 5
70% 846 1320 3
50% 2017 3142 1
40% 2018 3143 1
30% 2318 3719 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 17 1545
95% 17 20 1694
90% 17 20 1741
70% 973 1514 2
50% 2018 3142 1
40% 2019 3143 1
30% 2319 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.