Sequence Similarity Clusters for the Entities in PDB 2NY6

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48737
95 % 14 15 3489
90 % 14 15 3526
70 % 73 120 165
50 % 73 120 196
40 % 73 120 212
30 % 73 123 222
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 34 715
95 % 23 39 812
90 % 23 39 851
70 % 23 39 900
50 % 23 39 947
40 % 23 39 968
30 % 23 39 962
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1205
95 % 17 23 1474
90 % 288 482 4
70 % 998 1583 3
50 % 2424 3846 1
40 % 2425 3847 1
30 % 2818 4574 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 1203
95 % 17 23 1470
90 % 17 23 1499
70 % 1177 1866 1
50 % 2425 3846 1
40 % 2426 3847 1
30 % 2819 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.