Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 12411
95 % 10 15 3380
90 % 10 15 3417
70 % 13 31 1010
50 % 13 31 1058
40 % 13 31 1081
30 % 53 111 242
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 34 680
95 % 16 39 757
90 % 16 39 796
70 % 16 39 843
50 % 16 39 908
40 % 16 39 931
30 % 16 39 925
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1177
95 % 12 23 1436
90 % 206 461 4
70 % 727 1519 3
50 % 1785 3677 1
40 % 1786 3678 1
30 % 2013 4338 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1175
95 % 12 23 1431
90 % 12 23 1456
70 % 870 1782 1
50 % 1786 3677 1
40 % 1787 3678 1
30 % 2014 4338 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.