Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 12747
95 % 10 15 3469
90 % 10 15 3506
70 % 56 120 165
50 % 56 120 196
40 % 56 120 211
30 % 56 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 34 702
95 % 16 39 783
90 % 16 39 819
70 % 16 39 865
50 % 16 39 930
40 % 16 39 956
30 % 16 39 951
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1198
95 % 12 23 1467
90 % 213 476 4
70 % 756 1568 3
50 % 1859 3813 1
40 % 1860 3814 1
30 % 2130 4537 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1196
95 % 12 23 1463
90 % 12 23 1492
70 % 907 1850 1
50 % 1860 3813 1
40 % 1861 3814 1
30 % 2131 4537 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.