Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 12950
95 % 10 15 3515
90 % 10 15 3552
70 % 56 120 166
50 % 56 120 196
40 % 56 120 213
30 % 56 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 34 723
95 % 16 39 831
90 % 16 39 865
70 % 16 39 906
50 % 16 39 950
40 % 16 39 972
30 % 16 39 967
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1212
95 % 12 23 1483
90 % 224 500 4
70 % 779 1609 3
50 % 1907 3902 1
40 % 1908 3903 1
30 % 2180 4631 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1210
95 % 12 23 1479
90 % 12 23 1510
70 % 931 1894 1
50 % 1908 3902 1
40 % 1909 3903 1
30 % 2181 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.