Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13949
95 % 10 15 3798
90 % 10 15 3831
70 % 58 126 174
50 % 58 126 213
40 % 58 126 235
30 % 58 129 238
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 35 738
95 % 16 40 889
90 % 16 40 921
70 % 16 40 946
50 % 16 40 979
40 % 16 40 998
30 % 16 40 977
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 1183
95 % 12 24 1461
90 % 300 640 3
70 % 860 1765 2
50 % 2135 4337 1
40 % 2135 4337 1
30 % 2430 5109 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 1181
95 % 12 24 1458
90 % 12 24 1483
70 % 1036 2096 1
50 % 2136 4337 1
40 % 2136 4337 1
30 % 2431 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.