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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY5
Sequence Clusters for the Sequence Entities in PDB 2NY5
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10783
95% 10 15 2816
90% 10 15 2862
70% 13 27 1154
50% 13 27 1216
40% 13 27 1250
30% 13 29 1149
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 27 953
95% 16 32 1027
90% 16 32 1049
70% 16 32 1080
50% 16 32 1145
40% 16 32 1178
30% 16 32 1163
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 17 1429
95% 12 20 1577
90% 165 360 4
70% 623 1274 3
50% 1497 3031 1
40% 1498 3032 1
30% 1691 3590 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 17 1426
95% 12 20 1573
90% 12 20 1621
70% 728 1461 2
50% 1498 3031 1
40% 1499 3032 1
30% 1692 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.