POP-OUT | CLOSE
 
HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY5
Sequence Clusters for the Sequence Entities in PDB 2NY5
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10834
95% 10 15 2825
90% 10 15 2873
70% 13 27 1155
50% 13 27 1218
40% 13 27 1253
30% 13 29 1153
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 28 921
95% 16 33 979
90% 16 33 1003
70% 16 33 1034
50% 16 33 1102
40% 16 33 1131
30% 16 33 1120
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 17 1434
95% 12 20 1583
90% 166 365 4
70% 633 1291 3
50% 1522 3070 1
40% 1523 3071 1
30% 1716 3629 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 17 1431
95% 12 20 1579
90% 12 20 1627
70% 740 1480 2
50% 1523 3070 1
40% 1524 3071 1
30% 1717 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.