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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY5
Sequence Clusters for the Sequence Entities in PDB 2NY5
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 11573
95% 10 15 3103
90% 10 15 3142
70% 13 29 1106
50% 13 29 1163
40% 13 29 1190
30% 13 31 1086
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 30 861
95% 16 35 975
90% 16 35 994
70% 16 35 1023
50% 16 35 1063
40% 16 35 1090
30% 16 35 1067
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 18 1544
95% 12 21 1701
90% 184 412 4
70% 665 1386 3
50% 1599 3291 1
40% 1600 3292 1
30% 1803 3880 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 18 1543
95% 12 21 1699
90% 12 21 1746
70% 777 1588 2
50% 1600 3291 1
40% 1601 3292 1
30% 1804 3880 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.