Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 13847
95 % 10 15 3766
90 % 10 15 3801
70 % 57 125 171
50 % 57 125 209
40 % 57 125 232
30 % 57 128 238
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 35 715
95 % 16 40 857
90 % 16 40 889
70 % 16 40 918
50 % 16 40 962
40 % 16 40 986
30 % 16 40 970
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 1162
95 % 12 24 1439
90 % 297 631 3
70 % 852 1750 2
50 % 2092 4268 1
40 % 2092 4268 1
30 % 2383 5034 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 21 1160
95 % 12 24 1437
90 % 12 24 1462
70 % 1016 2064 1
50 % 2093 4268 1
40 % 2093 4268 1
30 % 2384 5034 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.