Sequence Similarity Clusters for the Entities in PDB 2NY5

Entity #1 | Chains: G
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 12979
95 % 10 15 3523
90 % 10 15 3560
70 % 56 120 166
50 % 56 120 198
40 % 56 120 214
30 % 56 123 222
Entity #2 | Chains: C
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 34 725
95 % 16 39 832
90 % 16 39 866
70 % 16 39 907
50 % 16 39 952
40 % 16 39 974
30 % 16 39 969
Entity #3 | Chains: L
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1215
95 % 12 23 1486
90 % 224 502 3
70 % 779 1611 3
50 % 1908 3908 1
40 % 1909 3909 1
30 % 2181 4637 1
Entity #4 | Chains: H
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 1213
95 % 12 23 1482
90 % 12 23 1513
70 % 931 1896 1
50 % 1909 3908 1
40 % 1910 3909 1
30 % 2182 4637 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.