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HIV-1 gp120 Envelope Glycoprotein (M95W, W96C, I109C, T257S, V275C, S334A, S375W, Q428C, A433M) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY5
Sequence Clusters for the Sequence Entities in PDB 2NY5
Entity #1: Chains: G - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 11942
95% 10 15 3248
90% 10 15 3285
70% 13 31 975
50% 13 31 1024
40% 13 31 1047
30% 13 33 980
Entity #2: Chains: C - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 33 684
95% 16 38 736
90% 16 38 777
70% 16 38 821
50% 16 38 894
40% 16 38 925
30% 16 38 915
Entity #3: Chains: L - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 1125
95% 12 23 1375
90% 192 433 4
70% 696 1454 3
50% 1689 3477 1
40% 1690 3478 1
30% 1897 4103 1
Entity #4: Chains: H - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 20 1123
95% 12 23 1370
90% 12 23 1395
70% 823 1682 1
50% 1690 3477 1
40% 1691 3478 1
30% 1898 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.