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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41971
95% 3 15 2849
90% 3 15 2895
70% 3 28 1004
50% 3 28 1078
40% 3 28 1101
30% 3 30 1025
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 29 776
95% 5 34 871
90% 5 34 892
70% 5 34 918
50% 5 34 977
40% 5 34 1008
30% 5 34 989
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 1448
95% 3 20 1595
90% 80 366 5
70% 294 1293 3
50% 725 3082 1
40% 726 3083 1
30% 796 3645 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 1445
95% 3 20 1591
90% 3 20 1636
70% 351 1486 2
50% 726 3082 1
40% 727 3083 1
30% 797 3645 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.