Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51572
95 % 3 15 3755
90 % 3 15 3789
70 % 23 125 171
50 % 23 125 206
40 % 23 125 230
30 % 23 128 232
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 35 708
95 % 5 40 843
90 % 5 40 878
70 % 5 40 911
50 % 5 40 951
40 % 5 40 974
30 % 5 40 957
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1146
95 % 3 24 1426
90 % 143 624 3
70 % 408 1729 2
50 % 1020 4220 1
40 % 1020 4221 1
30 % 1119 4972 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1144
95 % 3 24 1424
90 % 3 24 1450
70 % 492 2041 1
50 % 1021 4220 1
40 % 1021 4221 1
30 % 1120 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.