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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44378
95% 3 15 3107
90% 3 15 3146
70% 3 29 1108
50% 3 29 1165
40% 3 29 1191
30% 3 31 1087
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 30 862
95% 5 35 977
90% 5 35 997
70% 5 35 1025
50% 5 35 1064
40% 5 35 1090
30% 5 35 1067
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1546
95% 3 21 1703
90% 89 413 4
70% 315 1388 3
50% 772 3295 1
40% 773 3296 1
30% 847 3893 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1545
95% 3 21 1701
90% 3 21 1748
70% 374 1590 2
50% 773 3295 1
40% 774 3296 1
30% 848 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.