POP-OUT | CLOSE

An Information Portal to 111558 Biological Macromolecular Structures

HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45465
95% 3 15 3240
90% 3 15 3278
70% 3 31 973
50% 3 31 1021
40% 3 31 1044
30% 3 33 979
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 33 683
95% 5 38 739
90% 5 38 780
70% 5 38 822
50% 5 38 893
40% 5 38 922
30% 5 38 915
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1125
95% 3 23 1374
90% 92 431 4
70% 332 1445 3
50% 822 3457 1
40% 823 3458 1
30% 899 4083 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 20 1123
95% 3 23 1369
90% 3 23 1393
70% 399 1672 1
50% 823 3457 1
40% 824 3458 1
30% 900 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.