Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53165
95 % 3 15 3855
90 % 3 15 3887
70 % 23 126 179
50 % 23 126 218
40 % 23 126 239
30 % 23 129 243
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 37 712
95 % 5 42 846
90 % 5 42 881
70 % 5 42 912
50 % 5 42 964
40 % 5 42 984
30 % 5 42 960
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1203
95 % 3 24 1475
90 % 153 665 3
70 % 427 1803 2
50 % 1078 4435 1
40 % 1078 4435 1
30 % 1192 5225 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1201
95 % 3 24 1473
90 % 3 24 1500
70 % 521 2145 1
50 % 1079 4435 1
40 % 1079 4435 1
30 % 1193 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.