Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52067
95 % 3 15 3772
90 % 3 15 3805
70 % 23 125 172
50 % 23 125 211
40 % 23 125 234
30 % 23 128 239
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 35 717
95 % 5 40 859
90 % 5 40 891
70 % 5 40 922
50 % 5 40 966
40 % 5 40 989
30 % 5 40 971
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1166
95 % 3 24 1442
90 % 143 632 3
70 % 414 1752 2
50 % 1034 4272 1
40 % 1034 4272 1
30 % 1139 5038 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1164
95 % 3 24 1440
90 % 3 24 1466
70 % 499 2066 1
50 % 1035 4272 1
40 % 1035 4272 1
30 % 1140 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.