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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44230
95% 3 15 3094
90% 3 15 3132
70% 3 29 1103
50% 3 29 1160
40% 3 29 1186
30% 3 31 1081
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 30 857
95% 5 35 968
90% 5 35 988
70% 5 35 1018
50% 5 35 1059
40% 5 35 1086
30% 5 35 1063
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1542
95% 3 21 1696
90% 89 410 4
70% 313 1377 3
50% 769 3274 1
40% 770 3275 1
30% 844 3863 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1541
95% 3 21 1694
90% 3 21 1741
70% 373 1580 2
50% 770 3274 1
40% 771 3275 1
30% 845 3863 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.