Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47394
95 % 3 15 3385
90 % 3 15 3424
70 % 3 31 1013
50 % 3 31 1063
40 % 3 31 1088
30 % 22 111 242
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 685
95 % 5 39 759
90 % 5 39 798
70 % 5 39 845
50 % 5 39 909
40 % 5 39 933
30 % 5 39 927
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 1178
95 % 3 23 1437
90 % 101 461 4
70 % 352 1526 3
50 % 879 3692 1
40 % 880 3693 1
30 % 965 4355 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 1176
95 % 3 23 1432
90 % 3 23 1458
70 % 426 1790 1
50 % 880 3692 1
40 % 881 3693 1
30 % 966 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.