Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50248
95 % 3 15 3602
90 % 3 15 3643
70 % 23 122 167
50 % 23 122 198
40 % 23 122 215
30 % 23 125 226
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 34 735
95 % 5 39 855
90 % 5 39 889
70 % 5 39 931
50 % 5 39 981
40 % 5 39 995
30 % 5 39 987
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 1255
95 % 3 23 1538
90 % 133 590 3
70 % 393 1653 3
50 % 980 4026 1
40 % 981 4028 1
30 % 1078 4764 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 20 1253
95 % 3 23 1534
90 % 3 23 1570
70 % 476 1952 1
50 % 981 4026 1
40 % 982 4028 1
30 % 1079 4764 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.