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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44787
95% 3 15 3139
90% 3 15 3178
70% 3 29 1113
50% 3 29 1176
40% 3 29 1201
30% 3 31 1095
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 30 866
95% 5 35 984
90% 5 35 1005
70% 5 35 1036
50% 5 35 1081
40% 5 35 1102
30% 5 35 1077
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1557
95% 3 21 1724
90% 89 418 4
70% 322 1412 3
50% 792 3355 1
40% 793 3356 1
30% 869 3971 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1555
95% 3 21 1722
90% 3 21 1768
70% 384 1622 2
50% 793 3355 1
40% 794 3356 1
30% 870 3971 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.