Sequence Similarity Clusters for the Entities in PDB 2NY4

Entity #1 | Chains: A
ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50978
95 % 3 15 3688
90 % 3 15 3726
70 % 23 125 168
50 % 23 125 201
40 % 23 125 221
30 % 23 128 228
Entity #2 | Chains: B
T-cell surface glycoprotein CD4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 35 694
95 % 5 40 827
90 % 5 40 860
70 % 5 40 901
50 % 5 40 942
40 % 5 40 963
30 % 5 40 949
Entity #3 | Chains: C
ANTIBODY 17B, LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1126
95 % 3 24 1406
90 % 140 613 3
70 % 403 1704 2
50 % 1004 4154 1
40 % 1004 4155 1
30 % 1101 4901 1
Entity #4 | Chains: D
ANTIBODY 17B, HEAVY CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1124
95 % 3 24 1404
90 % 3 24 1429
70 % 485 2010 1
50 % 1005 4154 1
40 % 1005 4155 1
30 % 1102 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.