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HIV-1 gp120 Envelope Glycoprotein (K231C, T257S, E268C, S334A, S375W) Complexed with CD4 and Antibody 17b
Sequence Clustering and Redundancy Reduction Results
2NY4
Sequence Clusters for the Sequence Entities in PDB 2NY4
Entity #1: Chains: A - ENVELOPE GLYCOPROTEIN GP120 protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41433
95% 3 15 2816
90% 3 15 2862
70% 3 27 1154
50% 3 27 1216
40% 3 27 1250
30% 3 29 1149
Entity #2: Chains: B - T-cell surface glycoprotein CD4 protein, length: 184 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 27 953
95% 5 32 1027
90% 5 32 1049
70% 5 32 1080
50% 5 32 1145
40% 5 32 1178
30% 5 32 1163
Entity #3: Chains: C - ANTIBODY 17B, LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 1429
95% 3 20 1577
90% 80 360 4
70% 292 1274 3
50% 719 3031 1
40% 720 3032 1
30% 788 3590 1
Entity #4: Chains: D - ANTIBODY 17B, HEAVY CHAIN protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 17 1426
95% 3 20 1573
90% 3 20 1621
70% 348 1461 2
50% 720 3031 1
40% 721 3032 1
30% 789 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.